Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00263 ATGATGGAGCTAAAAAATGAGAAGCTAGTAAGGTTTTACAATGATGGAAAGCAGAACCTTGAGCAATCATGGGAAAAAAGAGATACTTTCCAATCCTGCGAAAAGTCATTGCCTATTGATAAAAACAGAATCAATATCAGAATTCCCACACTGGGAAAGTTGAAGGTCTTCTCAGAAAATCATGAGCCTTGGAAGAAGCGAATTCTTGATCCTGGAAGTGATATCTATTTGCAGTGGAACCgggttttcttgttttcttgcaTACTAGCACTTTTTGTTGATCCTCTCTTCTTTTACCTGCCCTCAGTAGCAAATAGCGGCGGTTCATCATGTATGGCTACTGATTTGAACTTGGGAATTGTTGTGACGTGTTTCCGAACCTTTGCTGATATTTTCTATCTCATGAACATGCTCATAAAGTTCAGGACAGCCTATGTGTCACCAAGTTCAAGGGTTTTCGGGAGGGGTGAGCTAGTTATGGATCCAAACATGATTGCAAAGCGGTATTTGAGATCAGAGTTCTTCATAGATCTCATAGCTACACTGCCTCTTCCTCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATAGCAACAATGCTCTTGTACTGATCGTTCTGCTTCAATATGTTCCCAGATTATATTTGATCTTCCCATTGAGTTCTCAGATTATCAAAGCCACTGGTTTAGTTACAAAGACGGCTTGGGCTGGAGCAGCTTATAATCTTTTACTTTACATGTTAGCTAGTCATGTCTTAGGAGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCAACATGCTGGAAATCTGAATGCAGAAAAGAAAGTGCCTCAAGAAAATGCGTTCTCCAGTACTTGGATTGCAGAACATTATACAATGATGATCGGCAAAATTGGGTAAATGGTACTTCTGTGTTTGACAACTGCAGTCCAGATAGTGACATCTTCAATTATGGAATTTTTGGAGCTGCAGTGGAAAATAATGTTGTCTCCTCGGAGTTTACTGAGAAGTACCTGTATTGTCTATGGTGGGGATTGCAGAACTTGAGTTCCTATGGGCAGGGGTTGACTACAAGCACCTTCATTTGGGAAACTGCCTTTGCAATACTGATAGCTATTCTTGGTCTAGTTCTATTTGCCCATTTGATTGGGAACATGCAGACCTATTTGCAATCAATCACTGTGAGGCTTGAGGAGTGGAGGCTAAAGCGACGTGACACTGAAGAGTGGATGAGACACCGGCAGCTCCCTCAACATCTGAGAGAACGTGTCAGAAGATTTGTTCAATACAAATGGCTTGCAACACGTGGGGTTGATGAAGAAACAATCTTAAGAGGCTTGCCCAAAGATCTTCGCAGAGACATCCAAAGCCACCTTTGCTTGGACCTTGTTAGACGTGTACCCTTTTTCTCACAAATGGATGATCAGTTGTTGGATGCAATCTGTGAGAAATTGGCCAATTGGCGGCGTTACAAGAAGAGGATGATAGCAAAGAGTCTAAGCTTGAGGGAATACCAGCTCAATGTCAGCGATGAAATGGAACATGACAGTGCTGTCACTTCAACTGCTTCACAGGCAAAACACCACTTAGCTGTCACCATACTGGCTTCGAGGTTTGCTGCAAACACAAGAAGAGGAGCACATAAGATCAAGGATGTCGAACTGCCTAAGTTGCCAAAGCCTCAAGAGCCAGACTTCTCAGTTGAGCCAGATATTGATGAATA 1745 0.4172 MMELKNEKLVRFYNDGKQNLEQSWEKRDTFQSCEKSLPIDKNRINIRIPTLGKLKVFSENHEPWKKRILDPGSDIYLQWNRVFLFSCILALFVDPLFFYLPSVANSGGSSCMATDLNLGIVVTCFRTFADIFYLMNMLIKFRTAYVSPSSRVFGRGELVMDPNMIAKRYLRSEFFIDLIATLPLPQIVIWFIMPAIRSSHADHSNNALVLIVLLQYVPRLYLIFPLSSQIIKATGLVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRKESASRKCVLQYLDCRTLYNDDRQNWVNGTSVFDNCSPDSDIFNYGIFGAAVENNVVSSEFTEKYLYCLWWGLQNLSSYGQGLTTSTFIWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQHLRERVRRFVQYKWLATRGVDEETILRGLPKDLRRDIQSHLCLDLVRRVPFFSQMDDQLLDAICEKLANWRRYKKRMIAKSLSLREYQLNVSDEMEHDSAVTSTASQAKHHLAVTILASRFAANTRRGAHKIKDVELPKLPKPQEPDFSVEPDIDE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00263 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 493 577 - -
Bva10g00263 581 Pfam Ion transport protein 79 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva10g00263 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 493 577 - -
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 345 362 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bva10g00263 581 Gene3D Helix hairpin bin 403 467 - -
Bva10g00263 581 MobiDBLite consensus disorder prediction 557 574 - -
Bva10g00263 581 SUPERFAMILY cAMP-binding domain-like 406 492 IPR018490 -
Bva10g00263 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 39 493 - -
Bva10g00263 581 Gene3D - 79 402 - -
Bva10g00263 581 MobiDBLite consensus disorder prediction 557 581 - -
Bva10g00263 581 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 39 493 - -
Bva10g00263 581 SUPERFAMILY Voltage-gated potassium channels 71 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00263 Bva-Chr10 3640665 3644541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00263 487 576 Ion Channels AT2G24610 50.000 1.75e-21 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00263 K05391 - gmx:100803334 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00263 10 3640665 3644541 Bva10g00263 10 3640665 3644541 ECH