Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00258 ATGCAGCAGAGGCTCAAGTTACAGCAACAGCAAGCCCTTATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCACCCCGGGATGCTAGCCGCAGCTATGTCTCAGATGGAGCCTATGCCAAGCGGAAATCTGCCTCCTGGTTTTGACAGCTCTTCTTGTCGCAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCTGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTCATCAGAAAAGAGAAGTCCTCATATGGTTTCGTGGACTACCATGATCGAGCCTCTGCTGCCCTTGCAATAATGACATTGCATGGACGTCAATTATATGGTCAAGCACTTAAAGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCCAGGGTCATGTGGGATCATAAAACTGGTCGCTCCAAAGGATATGGTTTTGTGGCTTTCCGTGATCAGCAGGAAGCCCAAAATGCCATCAATGATATGACTGGCAAATGGTTGGGAAACAGGCAAATACGATGCAATTGGGCAACTAAGGGAGCTGGTGCCAGCTCCAATGATGAGAAGAACAATGACACCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTcaagaaaataacaatgagGATGCTCCTGAAAACAACTCAGCATACACCACTGTTTACGTTGGCAACCTTCCCCATGATGTAACACAAACTGAACTCCACTGTCAGTTCCATGCACTTGGGGCTGGGGTCATTGAAGAAGTCCGAGTTCAGAGGGATAAAGGTTTTGGATTTGTTAGATACAACATTCATGAAGAAGCAGCAATGGCCATTCAGATGGCCAATGGAAGAATTATTCGTGGCAAGACAATGAAGTGCTCCTGGGGTAGCAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTGCCTCCTCCGGCTCAACCATATCAAATTCTTCCAACTGCAGGGATGAACCAAGGCTATTCTCCAGCCGAGTTGTTGGCTTATCAGCGCCAATTGGCCCTTAGTCAGGCTGCTGTACCTGTATCTGGCCTTTCTGGTCAAGCTCTCCTGCAAATGACTGGACAACATGGCCTAGCTGCAGCTTCCATGGGGCTAAGCTCTGGGGGATCACAAACCATGTATGATGGATATGCTAATAATTCATCAAGGCAGCAACTCATGTATTATCGTTA 1310 0.4595 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPMPSGNLPPGFDSSSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVAFRDQQEAQNAINDMTGKWLGNRQIRCNWATKGAGASSNDEKNNDTQNAVVLTNGSSDGGQENNNEDAPENNSAYTTVYVGNLPHDVTQTELHCQFHALGAGVIEEVRVQRDKGFGFVRYNIHEEAAMAIQMANGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVPVSGLSGQALLQMTGQHGLAAASMGLSSGGSQTMYDGYANNSSRQQLMYYR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00258 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Bva10g00258 436 SUPERFAMILY RNA-binding domain, RBD 252 345 IPR035979 GO:0003676
Bva10g00258 436 CDD RRM2_PUB1 141 215 - -
Bva10g00258 436 Gene3D - 239 340 IPR012677 -
Bva10g00258 436 CDD RRM3_TIA1_like 262 336 - -
Bva10g00258 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Bva10g00258 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Bva10g00258 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Bva10g00258 436 SUPERFAMILY RNA-binding domain, RBD 134 225 IPR035979 GO:0003676
Bva10g00258 436 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 433 - -
Bva10g00258 436 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 4 433 - -
Bva10g00258 436 MobiDBLite consensus disorder prediction 236 258 - -
Bva10g00258 436 Gene3D - 1 137 IPR012677 -
Bva10g00258 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Bva10g00258 436 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Bva10g00258 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Bva10g00258 436 Gene3D - 138 238 IPR012677 -
Bva10g00258 436 SMART rrm1_1 56 125 IPR000504 GO:0003723
Bva10g00258 436 SMART rrm1_1 263 332 IPR000504 GO:0003723
Bva10g00258 436 SMART rrm1_1 141 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00258 Bva-Chr10 3608993 3616812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00258 51 330 Eukaryotic Initiation Factors Gene Family AT3G16380 26.599 2.31e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00258 K13201 - gmx:100777108 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00258 10 3608993 3616812 Bva10g00258 10 3608993 3616812 ECH