Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00188 ATGTCCAGCATCTTGTTTGCTCATCTCTTTAAGAATCGTTTCTTAGTGTTCATTACGGTTCTTTATTTGCTATTGAATGTGAATGAAGCCGAAAACAAAATAGAGCCACCGGCCATGCCGGAGATTGCCCAACCTATCCGTCCAGGCAAGGGAACTATAATAGTGATCCTCTCAGTAATGTTTGGGCTGTCATTTCTCTTACTTGCCTATGTCAAGTTCTGCAGAAGCAGCCCTCTTGAAATTCTGAATCGAGACACCCATCTCCAGAATATTCAAGGGCTTGCTCGATCAGCTTCTAGAAATTCGGGGATTGACAAGAGAGTAATCGAAGCACTTCcaattttcaagttttcttcACTCAAGGGGTCAAAAGGAGGACTGGAATGTGCTGTTTGCCTGTCGAAATTCGAAGACACTGAAGTTCTCAGATTGTTGCCAAAGTGCAAGCATGCTTTCCACATGAATTGCATTGATAAGTGGCTGGAAGGTCACAGCAGCTGCCCTATTTGCAGGTGCAGGGTGGACCCAGTGGACATCAACAGCTTCACTTACTCAATCAGCTCAAGGTACCTGAGAGTTCCTTCAAATTTAACGGAGGACCCAAATCTTGAAATCTTTGTTCAGAGAGAGCAAGATCATCTAGGGTCATCAAGATTTAACATTGGAAACATCTTTTGTAATGTGGACAAGGGCCGGAGACAAGAACTGCTTATTGATCATGGAGGTGATCTTAATTGGAAACCTGTGCACAAGTTCAATCACAGAATAGtaatatctaattttgtaACCAGGACCAGATGGAGTGATCTTAATTCTTCAGACTTATTATCCTTAAACACTGAGATGCTCAATGTTATGTCAAGCAGAAGATTCTCTCCTTTGGAATCGCCTCCTAACATGGTGAAGTTCCACAGAAGTTCGAGCCTTCCAACTAGTTCCAATGAGGAAGAGAATTCATTTTCTCGGCTGAATCAGGGTGAGAAGAGATCCATGTCGGAGATTGCTAATGTTCCAAGGTTTGCGGAAATCAGCACACACAACAGAATAAAACAATCAGTGGGATCTAGCAGAGAAGAGAGATTGAGGAGGATTTGGTTGCCAATTGTGCGGCGAACAGTGCAATGGTTCGTACGAGGAGACAGAACCTCAACACAATCACAACACAAAAGATTGGCTGCAAACGTTTG 1187 0.4238 MSSILFAHLFKNRFLVFITVLYLLLNVNEAENKIEPPAMPEIAQPIRPGKGTIIVILSVMFGLSFLLLAYVKFCRSSPLEILNRDTHLQNIQGLARSASRNSGIDKRVIEALPIFKFSSLKGSKGGLECAVCLSKFEDTEVLRLLPKCKHAFHMNCIDKWLEGHSSCPICRCRVDPVDINSFTYSISSRYLRVPSNLTEDPNLEIFVQREQDHLGSSRFNIGNIFCNVDKGRRQELLIDHGGDLNWKPVHKFNHRIVISNFVTRTRWSDLNSSDLLSLNTEMLNVMSSRRFSPLESPPNMVKFHRSSSLPTSSNEEENSFSRLNQGEKRSMSEIANVPRFAEISTHNRIKQSVGSSREERLRRIWLPIVRRTVQWFVRGDRTSTQSQHKRLAANV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00188 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 298 - -
Bva10g00188 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 305 388 - -
Bva10g00188 395 CDD RING-H2_PA-TM-RING 128 171 - -
Bva10g00188 395 Pfam Ring finger domain 128 171 IPR001841 -
Bva10g00188 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 179 IPR013083 -
Bva10g00188 395 MobiDBLite consensus disorder prediction 304 328 - -
Bva10g00188 395 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Bva10g00188 395 PANTHER RING-H2 FINGER PROTEIN ATL4J 21 298 - -
Bva10g00188 395 PANTHER RING-H2 FINGER PROTEIN ATL4J 305 388 - -
Bva10g00188 395 SUPERFAMILY RING/U-box 109 177 - -
Bva10g00188 395 SMART ring_2 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00188 Bva-Chr10 3252108 3255697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00188 36 382 C3H Transcription Factor Family AT2G20030 41.644 6.97e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00188 K10664 - gmx:100803881 412.149