Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00171 ATGGAGGCACCTGAGTTCTTCCAGAACAGCTTTTCCTCACAATTCCCTTATGATAACAAACCAACCACCGCCCCTCCCGTTGGCGTTTCCGACAATTTCATCGTCGAAGACCTCCTCGACTTCCCCAACGATGACGCCATCATCGCCGACGGTGCCTTGGACTCTGTTCCCAGCAATTCTGTCGACTCTTCTTTAACCGCCGTTGACAGTTGCATTAATTCCCCTGCCTTTTCTGGGTGCAACACCAATTTTGTCGGGGATATTGGATGCCAGAATTTCCCTGACGGCCATTTCTCCGGTGACCTCTGCGTGCCGTATGATGATGCAGCGGAGCTGGAATGGCTTTCCAATTTCGTGGAGGAATCGTTTTCAAGCGAGGACCTGCAGAAGCTGCAGCTGATATCTGGCATGAAAGCTCGAACCGACGAAGTATCAGAGAGCCGTGAATTCCAGCCCGAACCGAACCGGAACAACCCAATATTCAACCGGGAAGTGTCGGTTCCTGCCAAGGCTCGCAGCAAGCGCTCCCGTGGCCCCCCATGCAACTGGACCTCACGCCTCCTCGTCCTCTCGCCAACCACGTCGCCTTCGGAGCATGACGTCATCATTCCGACACCTGGAAAGAAAGCGGGCAAGCCAGCCCCAAGGAAGAAGGAGAGTAGCGACGGTTCCGGCGGAGATGGACGCAAGTGCCTTCATTGTGCAACAGATAAGACGCCGCAGTGGAGGACCGGGCCTATGGGCCCGAAAACGCTTTGCAATGCTTGTGGTGTGAGATACAAGTCGGGCAGATTGGTGCCCGAGTATCGGCCCGCAGCGAGCCCAACATTCGTGCTGACGAAGCATTCCAATTCGCACCGGAAGGTGCTGGAGCTCCGACGCCAGAAGGAGATGATGGGGGCCCaccaacaacaacagcagcagcaacattTTCTGCAACAACAGAATATGATGTTCGATATGCCCAACGGTGACGATTACTTGATCCACCAACACCTGGGGCCCGATTTCAGGCAGCTCATTTA 1025 0.5366 MEAPEFFQNSFSSQFPYDNKPTTAPPVGVSDNFIVEDLLDFPNDDAIIADGALDSVPSNSVDSSLTAVDSCINSPAFSGCNTNFVGDIGCQNFPDGHFSGDLCVPYDDAAELEWLSNFVEESFSSEDLQKLQLISGMKARTDEVSESREFQPEPNRNNPIFNREVSVPAKARSKRSRGPPCNWTSRLLVLSPTTSPSEHDVIIPTPGKKAGKPAPRKKESSDGSGGDGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMMGAHQQQQQQQHFLQQQNMMFDMPNGDDYLIHQHLGPDFRQLI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00171 341 MobiDBLite consensus disorder prediction 212 230 - -
Bva10g00171 341 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Bva10g00171 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Bva10g00171 341 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Bva10g00171 341 MobiDBLite consensus disorder prediction 186 200 - -
Bva10g00171 341 MobiDBLite consensus disorder prediction 143 230 - -
Bva10g00171 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Bva10g00171 341 PIRSF Txn_fac_GATA_plant 19 320 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva10g00171 341 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
Bva10g00171 341 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Bva10g00171 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 289 - -
Bva10g00171 341 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Bva10g00171 341 Gene3D - 227 316 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00171 Bva-Chr10 3161336 3163029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00171 32 341 C2C2-Gata Transcription Factor Family AT5G25830 53.392 1.53e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva10g00171 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00171 - - zju:107420464 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00171 10 3161336 3163029 Bva10g00171 10 3161336 3163029 ECH