Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00170 ATGGAAGGTGAAAGCACCATAGCCATAGGGATGATGGCGGTGAGTTCGGCCTGCAAAGATGGGAGCAAGTTGGCAATGGAGAATGGCAAGTATGTGCGCTACACACCAGAACAGGTCGAGGCCCTTGAGAGGCTTTACCATGAATGCCCCAAACCCAATTCCATGCGCCGCCAACAGCTCATCAGAGAGTGCCCCATTCTCTCCCATATCGAGCCCAAGCAGATCAAGGTTTGGTTCCAGAATCGCAGATGTAGAGAGAAGCAGCGGAAAGAATCGTCACGCTTGCAAGGCGTAAATAGGAAGCTCACTgcaatgaataaattattgatgGAGGAAAATGACAGATTGCAGAAGCAAGTGTCGCAGCTGGTTTATGAGAACAGCTTCTTCCGCCAACAGGCACAAAATCAGGCGACCCTTGCTACGACGGACACGAGTTGCGAGTCGGTGGTAACGAGCGGTCAGAACCATTTGACACCTCAGCATCCACCAAGGGATGCCAGCCCTGCTGGACTTCTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCGACAAGGGTTGCTGAAATCCTCAAAGATAGGCCGTCATGGTACCGCGATTGCCGATCCGTGGACGTTTTAAATGCAATGTCCACCGGAAGTGGTGGAACCATTGAACTGCTTTACATGCAGTTGTATGCACCGACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTGCGCTACACATCTCTCATGGAGGATGGTAGTCTTGTGATCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTACCATGCCGCCAGTGCAGCATTTTGTTAGAGCAGACACGCTGCCTAGCGGGTACCTGATTAGACCTTGTGAAGGAGGTGGATCAATCATCCATATTGTTgatcatattaatttagagcCTTGGAGTGTACCTGAAGTGTTGCGCCCACTTTATGAGTCGTCAACCTTGCTTGCTCAAAGGACAACCATGGCGGCCTTGCGGCATTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAATGCGACAGGATGGGGAAGAAGGCCTGCAGCGCTACGTGCACTAAGTCAGAGGCTGAGCAAGGGCTTCAATGAAGCTGTGAACGGGTTTACAGATGATGGCTGGTCAATATTAGAAAGTGATGGCATTGATGATGTCACCCTGCTTGTAAATTCATCTCCTAGCAAGACGATGGGGGCAAATCTTGGTTATAACAATGGATTTCCTTCTATGGGAACTTCCGTGCTATGTGCCAAAGCATCAATGTTGTTACAGAATGTCCCTCCAGCAATTCTACTTAGATTCTTGCGGGAGCACCGATCAGAGTGGGCAGATAGCAGTATTGATGCTTATTCAGCCGCTGCCATTAAAGCTGGTCCCTGTACCTTACCAGGGGCGCGAGTTGGTTTTGGGGGTCAGGTTATTCTTCCACTGGCTCACACAATCGAGCATGAAGAGTTCATGGAAGTCATTAAGTTTGAAAACATGGGCTATTATCGGGATGACATGACAATACCTGGtgacattttcttcttgcaaCTCTGTAGCGGAGTGGATGAGCATGCAGTTGGAACCTGTGCTGAACTCATTTTTGCTCCTATTGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTGTGGTTTTCGAATTATACCTCTTGATTCAGCCACAGATGCTGCTAGTCCAAACCGTACACTCGATCTTGCATCCGCACTTGAGGCTGGAACTACAGGAAACAAAGCAGCTGGTGACAATTCTGGCCATTCTGGGAGCACTAAATCAGTAATGACAATAGCCTTCCAGTTTGCTTTCGAAGTCCACCTTCAAGATAATATAGCTGCTATGGCCAGACAATATGTCCGCAGTATTATTGCATCTGTTCAGAGGGTTGCATTGGCTCTCTCCCCTTCACGTTTTGGTTCTCAAAATGGTTTTCGCCCACCTCCTGGCACTCCTGAGGGGCAAGCACTTGCTCGGTGGATCTGTAACAGTTATAGGTGCTATCTAGGGGTAGAACTACTAAAATGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCACTCAGACGCTATCTTGTGCTGCTCTCTAAagGCACTGCCGGTTTTCACATTTGCAAATCAAGCTGGACTCGACATGCTTGAGACAACCTTGGTTGCTCTTCAAGACATCACTCTGGAAAAAATTTTTGATGACAACGGAAAGAAAACCCTGTGCTCTGAGTTCCCTCAGATACTGCAGCAGGGTTTTATGTGTATTCAAGGCGGTATATGTTTGTCCAGCATGGGGAGGCCAGTGTCATATGAGAGAGCAGTGGCCTGGAAAGTGTTGAACGAAGAAGAAACTGCTCATTGCATCTGTTTCATGTTTATCAATTGGTCTTTTGTCTG 2549 0.4735 MEGESTIAIGMMAVSSACKDGSKLAMENGKYVRYTPEQVEALERLYHECPKPNSMRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKESSRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQAQNATLATTDTSCESVVTSGQNHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRSVDVLNAMSTGSGGTIELLYMQLYAPTTLAPARDFWLLRYTSLMEDGSLVICERSLNNTQNGPTMPPVQHFVRADTLPSGYLIRPCEGGGSIIHIVDHINLEPWSVPEVLRPLYESSTLLAQRTTMAALRHLRQISQEISQPNATGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSILESDGIDDVTLLVNSSPSKTMGANLGYNNGFPSMGTSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCTLPGARVGFGGQVILPLAHTIEHEEFMEVIKFENMGYYRDDMTIPGDIFFLQLCSGVDEHAVGTCAELIFAPIDASFSDDAPILPCGFRIIPLDSATDAASPNRTLDLASALEAGTTGNKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQDNIAAMARQYVRSIIASVQRVALALSPSRFGSQNGFRPPPGTPEGQALARWICNSYRCYLGVELLKCEGSESILKSLWHHSDAILCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQILQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00170 848 CDD homeodomain 30 90 IPR001356 GO:0003677
Bva10g00170 848 CDD START_ArGLABRA2_like 168 383 - -
Bva10g00170 848 Pfam START domain 174 382 IPR002913 GO:0008289
Bva10g00170 848 ProSiteProfiles 'Homeobox' domain profile. 25 89 IPR001356 GO:0003677
Bva10g00170 848 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 15 848 IPR044830 GO:0003700
Bva10g00170 848 SMART HOX_1 27 93 IPR001356 GO:0003677
Bva10g00170 848 Gene3D - 208 390 IPR023393 -
Bva10g00170 848 CDD bZIP 82 121 - -
Bva10g00170 848 ProSiteProfiles START domain profile. 164 392 IPR002913 GO:0008289
Bva10g00170 848 Gene3D - 22 96 - -
Bva10g00170 848 SMART START_1 173 383 IPR002913 GO:0008289
Bva10g00170 848 Coils Coil 99 126 - -
Bva10g00170 848 Pfam Homeodomain 30 88 IPR001356 GO:0003677
Bva10g00170 848 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
Bva10g00170 848 SUPERFAMILY Bet v1-like 173 385 - -
Bva10g00170 848 Pfam MEKHLA domain 707 847 IPR013978 -
Bva10g00170 848 PANTHER CLASS III HD-ZIP PROTEIN CNA1 15 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00170 Bva-Chr10 3146581 3154386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00170 26 848 Homeobox Transcription Factor Family AT4G32880 81.039 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva10g00170 START 4.1e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00170 K09338 - gmx:100815727 1546.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00170 10 3146581 3154386 Bva10g00170 10 3146581 3154386 ECH