Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00124 ATGTCACCGCCGCCCCTGCTCGGCATAGGGGAAGAGGAAGGTCAAAGCAATGTCACTTTACTGGCTTCCTCAACCTCCATGGAAAGTGCTTGCCGAAACAACCCGGAATTAAAAGAACGCAATTATATGGGACTTTCTGATTGTTCTTCTGTGGATAGCTCATTACCATCTTTCCCAGATGAGAAGAAAAGTAATCTGAATCTGAAAGCAACAGAGCTCACGCTTGGGCTTCCCGGATCTCAGTCTCCTGAAAGGAACTCTGATCTCTGCTTAAGAAGCTCAACTCAATTTGATGAGAAACCCTTGTTTCCTTTGCGTCCTTCAACTGAGGATCACCACTCATCATCAAAGACTGCTATTTTGGGTAACAAAAGAGGTTTCTCAGATGCTATGAATGGGTTCTCAGAGGGGAAATTTCTAGTTGATTCAGAGGTCAATACTATACTGTCACCCAAGCCTACTCCTAATTTAGGATTGAAAGCCAGTTCTAAGCTTGAGAACCTTGGGACTCAGCAAGtcaaagcaaaagaggtaCCACCAACAAAGGTGGCAGTTGAAAGGCCTCATGCTGTCGATGAAACTAGACCAAATCTTCATGGATCTGCTACTAATAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTGGGTTGGCCGCCTATAAGATCATTTAGGAAAAATTCGTTGGCCGGTACTTCAAAAAACAATGAGGAAGTAGATGGAAAAGCTGGGTCTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGACCTGAGGACTTATTCTGCTTATCCAGAACTGTCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATTGGTCAATGTGGACCGCATGGAACTTTGGGTAGGGAGATGCTGAATGAAAGCAAGCTTAAGGATCTACTTCATGGGTCAGAATATGTTCTTACTTATGAGGACAAAGATGGAGACTGGATGCTTGTTGGTGATGTTCCCTGGGAgaTGTTTATTGATACTTGCAGGAGGCTGAGGATCATGAAAAGTTCCGATGCCATTGGACTAGCAGCTCCCAGGGCTGTGGAAAAAAGCAAGAGCAGGAACTAGGCAGCATTACTAAAGCGTGAACTATCCATCTAACTGTCTATGGGATTGAAAGCTTCAACGACGTATGGTTACTTGTAAGAGAGGACTAAAGGCGTGTTGGGCTGGATAGATTATCATTTTATGCTGCCGTAATCCTAATATAATTTACCGTGTCTGTTTTATGTTGTTGTGGAATTTCTGTTTTGTAAGTTCTTCAAGGTTGTCAAAGTTATAAAACCCCAAAGACATGACTATGGGAGTACTTAAAATTTCTCTGTGCACAAGCTCCTGTTCTGATGCAGGATCTGTAGTTTGTAAATTGCATCTTGCTTCAAACCTAtctatatgtgtgtgtgataAAAAAACAAGTATTGTGTCGTACTTTTGACTGTTAATTTCTACTTTAT 1493 0.4159 MSPPPLLGIGEEEGQSNVTLLASSTSMESACRNNPELKERNYMGLSDCSSVDSSLPSFPDEKKSNLNLKATELTLGLPGSQSPERNSDLCLRSSTQFDEKPLFPLRPSTEDHHSSSKTAILGNKRGFSDAMNGFSEGKFLVDSEVNTILSPKPTPNLGLKASSKLENLGTQQVKAKEVPPTKVAVERPHAVDETRPNLHGSATNNSSAPATKAQVVGWPPIRSFRKNSLAGTSKNNEEVDGKAGSGALFIKVSMDGAPYLRKVDLRTYSAYPELSSALEKMFSCFTIGQCGPHGTLGREMLNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAAPRAVEKSKSRN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00124 368 MobiDBLite consensus disorder prediction 197 212 - -
Bva10g00124 368 SUPERFAMILY CAD & PB1 domains 245 348 - -
Bva10g00124 368 Gene3D - 242 361 - -
Bva10g00124 368 PANTHER AUXIN-INDUCED PROTEIN 23 360 - -
Bva10g00124 368 Pfam AUX/IAA family 71 356 IPR033389 -
Bva10g00124 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 360 IPR003311 GO:0005634|GO:0006355
Bva10g00124 368 ProSiteProfiles PB1 domain profile. 247 349 IPR000270 GO:0005515
Bva10g00124 368 MobiDBLite consensus disorder prediction 190 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00124 Bva-Chr10 2839613 2844080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00124 261 349 B3 DNA Binding Superfamily AT1G19220 32.584 3.34e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Bva10g00124 AUX_IAA 1.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00124 K14484 - gmx:100815447 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00124 10 2839613 2844080 Bva10g00124 10 2839613 2844080 ECH