Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00122 atggaGCTGTATGAACATGATTTCTTAGAGGAACTACTAGCTCTAGGAAGAGAAACATGGGACACGATTCCAACAGAAGCAAACCAGCTCTTCTCTAGTAATCACTGGAGTTTTGATTGTTCTGATCAAAACTCTGTGGCGTTTCTTCCAGATTCTTCCTGTCAAGAAGTTCCCCAGAGTTACAACAATTACGCCTTCAATGAAATCTATGCTTCCCTTCTTAATGAATTCTCTGCACCACAGATTATTGATTCATCATCATACAACACCCACGATACTCCTCTACTTGATACCCCGCCATTTCTGGCTCCAGAAGATTACCCGTTGTCCAtgatggaagaagaagatcTGGTTTTTCATGGAGAAGAGCTTCAAAGTTTGGACCTACAACCCACATGTAAAATAGAGCCAAGCCAATCCGCTGAAATGCCAGTTTTCAACACGGGGTCGTGCTTTGAAAGAAAAGCTAGACTTAAGAAGCTGCAGGGGCAGCCCTCCAAGAATCTAATGGCcgagaggagaagaagaaagaggttAAACGATCGCCTCTCAATGTTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAGCATCCATACTTGGAGACACTATAGATTACATGAAGGAACTCTTGGAGAAGATCAACCATTTGCAACAAGAAACAGAAGTAGATTCAAACACGGTGGGCATTTTCAAGGATGCAAAGCCAAATGAAATCTTTGTTAGAAATTCACCCAAGtTTGATGTGGAGAAGAGGAATGTGGACACCCGGATTGAAATCTGCTGTGCAGGGAAGCCAGGCTTGTTGCATTCTACATTAAACACTGTGGAAGCATTAGGTCTTGAGATTCAACAGTGTGTTATCAGCTGTTTCAATGATTTTACAATGCAGGCTTCTTGCACAGagGAATTGGAGCAAAGAAGACTGAAGTCTGAAGATATAAAGCAAGCATTATTTAGAAGCGCGGGTTATGGAGGAAGATGTTTGTG 995 0.399 MELYEHDFLEELLALGRETWDTIPTEANQLFSSNHWSFDCSDQNSVAFLPDSSCQEVPQSYNNYAFNEIYASLLNEFSAPQIIDSSSYNTHDTPLLDTPPFLAPEDYPLSMMEEEDLVFHGEELQSLDLQPTCKIEPSQSAEMPVFNTGSCFERKARLKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRASILGDTIDYMKELLEKINHLQQETEVDSNTVGIFKDAKPNEIFVRNSPKFDVEKRNVDTRIEICCAGKPGLLHSTLNTVEALGLEIQQCVISCFNDFTMQASCTEELEQRRLKSEDIKQALFRSAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00122 331 Gene3D - 156 227 IPR036638 GO:0046983
Bva10g00122 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Bva10g00122 331 CDD ACT_UUR-ACR-like 258 320 - -
Bva10g00122 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Bva10g00122 331 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Bva10g00122 331 PANTHER DNA BINDING PROTEIN 3 331 - -
Bva10g00122 331 SMART finulus 169 218 IPR011598 GO:0046983
Bva10g00122 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00122 Bva-Chr10 2828934 2830585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00122 93 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 55.102 1.29e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g00122 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00122 - - gmx:100814388 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g00122 10 2828934 2830585 Bva10g00122 10 2828934 2830585 ECH