LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00060	ATGGCGGCTACTACGGACGCCGATGATCTCCGGGCTCTACTTTCCGAGCAAAGCGACGAGTTTTTAATGGCCAAAACCCTAGACTCCGATTTACACTTTGCTTTCGAACTGCAAATGCAGGAAGCGATTGATGCATCTCTCGCTTCACAGCCATCAGCTTCAACTCTCGCGCCATTTACATCTCCGGCTTCGCTTCCGGAGGGAGAGATAGACGACTCCGTTCTGGGCGTGGCGGCGAAGCTTATGCTGGACGACGTGCAAATTGTTACTCAACAACTTGTTGatcaagaaaaatgtcaagcGGAGATGGAGAAAACGTTGGAAGATTTGGACCGTCGGATTTTCGACCAGAAATTCGCTTgggaaatttttaatatacctGAGGATGAGTGGAAAAACTACGGTGACAATTTCCATAGGCCCTACTACAATGATGGAGCTTCGTCTtcgtcttcatcttctttgtcGCTGCGGAGCCCTTCTCTGCAAACAGAGAATTTCAAATTGTACTTCAAGGGTTTAGTGAGCGAAGAGAGGTTTAGAGATATCAGGGTGGTTGTTGCTTCCGCCGGCATTGCCATCTGCGATTCGAGGGATTATCTGATTTTTGAAGTAAAGAAGCCTCTTGAAGCAGTGGAAAGTGGTGGATTGGTGCTGAGCAGTGAATGTGCCGAACTGCAAGCTTTGATTGAAGGTCTTGATATGGCTTTTGGCTTGGGATTACAAAGGCTAAGCATTTTCTTTGATGACTCTGTGCTTTACAATTATGTCATAGGCATAGAGTCCAAAAGCAATGGAAAATTGGCAGGGCTAGTGAATCAGGTGTCTCatctccaaaagaaatttgtatCTTGTGTGCCATGTCTTGTTGGAAGGAATGATATCAAGTATGCTTTTAAATCTGCAAGAGATTCCATAGTTTCTCAAATCACATGGTCTGAAGAAACCGATAACAGCAAGATCATGAAGGAAACTTGTGTCATTTGTTTTGAAGATACAGATGCTGGTAAGATATTTTCAGTGGATGATTGCCTGCACAGGTATTGTTTTTCATGTATGAAGAAGCATGTGGAGGTGAAGGTTCTTAATGGGATGATGGCGAGTTGCCCTCACGACGGTTGTAAATCCGAGGTGAAACTTGAAAGTTGCAAAAAATTTTTAGCACCAGAATTGGTTGAAGTCATTGGCCAACGGATTAAGGAATCGGCTATTCCAGTCACTGAGAAAGTGTATTGCCCTTTTCCTAGGTGCTCAGCTTTGATGTCAAAACATGAGGTGTTAGAGTACTCAAAGACATGCTTTGTTGGAGCTGAACAACTTGGAGCCAGGAAATGCATGAAATGCCTTCAATTTTTCTGTATCAATTGCGCGGGCCCCTGGCATTCCAATATGAACTGTCATGACTATAAACGGTCGAATCATTATCTTCAGGCAGAAGATACTAAGCTGAAGTCTCTTGCTGCTAGCAGACGGTGGCGGCAGTGTGTGAAGTGCAATCACATTGTTGAACTTACTGAAGGTTGCTATCATATTACATGCAGATGTGGCTATGAATTTTGCTACACGTGTGGAGCAGAGTGGAAGAACAAGAAAGCGACATGCTCCTGTCCAATCTGGGATGAGCGTAACATAATACGTTG	1640	0.425	MAATTDADDLRALLSEQSDEFLMAKTLDSDLHFAFELQMQEAIDASLASQPSASTLAPFTSPASLPEGEIDDSVLGVAAKLMLDDVQIVTQQLVDQEKCQAEMEKTLEDLDRRIFDQKFAWEIFNIPEDEWKNYGDNFHRPYYNDGASSSSSSSLSLRSPSLQTENFKLYFKGLVSEERFRDIRVVVASAGIAICDSRDYLIFEVKKPLEAVESGGLVLSSECAELQALIEGLDMAFGLGLQRLSIFFDDSVLYNYVIGIESKSNGKLAGLVNQVSHLQKKFVSCVPCLVGRNDIKYAFKSARDSIVSQITWSEETDNSKIMKETCVICFEDTDAGKIFSVDDCLHRYCFSCMKKHVEVKVLNGMMASCPHDGCKSEVKLESCKKFLAPELVEVIGQRIKESAIPVTEKVYCPFPRCSALMSKHEVLEYSKTCFVGAEQLGARKCMKCLQFFCINCAGPWHSNMNCHDYKRSNHYLQAEDTKLKSLAASRRWRQCVKCNHIVELTEGCYHITCRCGYEFCYTCGAEWKNKKATCSCPIWDERNIIR	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00060	546	ProSitePatterns	Zinc finger RING-type signature.	344	353	IPR017907	-
	Bva10g00060	546	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	31	543	IPR031127	GO:0004842\|GO:0016567
	Bva10g00060	546	SUPERFAMILY	RING/U-box	480	543	-	-
	Bva10g00060	546	SMART	ibrneu5	393	466	IPR002867	-
	Bva10g00060	546	SMART	ibrneu5	479	536	IPR002867	-
	Bva10g00060	546	Gene3D	-	166	306	IPR036397	GO:0003676
	Bva10g00060	546	SUPERFAMILY	RING/U-box	325	405	-	-
	Bva10g00060	546	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	31	543	-	-
	Bva10g00060	546	ProSiteProfiles	Zinc finger RING-type profile.	326	372	IPR001841	-
	Bva10g00060	546	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	320	404	IPR013083	-
	Bva10g00060	546	ProSiteProfiles	TRIAD supradomain profile.	322	540	IPR044066	-
	Bva10g00060	546	Pfam	IBR domain, a half RING-finger domain	481	534	IPR002867	-
	Bva10g00060	546	Pfam	IBR domain, a half RING-finger domain	408	466	IPR002867	-
	Bva10g00060	546	Gene3D	-	464	545	-	-
	Bva10g00060	546	Pfam	Reverse transcriptase-like	188	303	IPR002156	GO:0003676\|GO:0004523
	Bva10g00060	546	SMART	ring_2	326	372	IPR001841	-
	Bva10g00060	546	SMART	ring_2	495	539	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00060	Bva-Chr10	1902613	1906333	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva10g00060	160	525	C3H Transcription Factor Family	AT2G19610	37.940	4.12e-80	255

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00060	-		-	pmum:103324350	677.552