Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00059 ATGACATGGTCTGAAGAAACCGATTACAGCAAGATCATGAAGGAAACTTGTGTCATTTGTTTTGAAGATACAGATGCTGATAAGATATTTTCAGTGGACGATTGCCTGCACAGgtattatttttcatgtatGAAGAAGCATGTGGAGATGAAGCTTCTTAACGGGATCATGGCGAGTTGTCCTCACGACGGTTGTAAATCTGAGGTGAAACTTGAAAGttgcaaaaaaattttagcacCAGAATTGGTTGAAGTCATCAGCCAACGCATTAAGGAATCGGCTATTCCAGTCAGTGAGAAAGTGTATTGCCCTTTTCCTAGGTGCTCAGCTTTGATGTCAAAACATGAGGTGTTAGAGTACACAAAGACATGCTTTGTTGGAGCTGAACTACTTGGAGCCAGGAAATGCATGAAATGCCTTCAATTTTTCTGTATCAATTGTGCGGTCCCCTGGCATTCCAGTATGAACTGTCATGACTATAAACGGTCGAATCATTATCTTCAGGCAGAAGATACTAAGATGAAGTCTCTTGCTGCTAGCAGACGGTGGCGGCAGTGTGTGAAGTGCAATCACATTGTTGAACTTGCTGAAGGTTGCTATCATATTACATGCAGATGTGGCTATGAATTTTGCTACTCGTGTGGAGCAGTGTGGAAGAACAAGAGAGCTACATGCTCCTGTCGAATCTGGGATGAGCGTAACATAATACGTGATCAACATCAAAGATG 728 0.408 MTWSEETDYSKIMKETCVICFEDTDADKIFSVDDCLHRYYFSCMKKHVEMKLLNGIMASCPHDGCKSEVKLESCKKILAPELVEVISQRIKESAIPVSEKVYCPFPRCSALMSKHEVLEYTKTCFVGAELLGARKCMKCLQFFCINCAVPWHSSMNCHDYKRSNHYLQAEDTKMKSLAASRRWRQCVKCNHIVELAEGCYHITCSALVLVDVAMNFATRVEQCGRTRELHAPVESGMSVT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00059 240 ProSiteProfiles Zinc finger RING-type profile. 17 63 IPR001841 -
Bva10g00059 240 Gene3D - 155 225 - -
Bva10g00059 240 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 205 IPR031127 GO:0004842|GO:0016567
Bva10g00059 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 98 IPR013083 -
Bva10g00059 240 SMART ibrneu5 84 157 IPR002867 -
Bva10g00059 240 SUPERFAMILY RING/U-box 171 205 - -
Bva10g00059 240 Pfam IBR domain, a half RING-finger domain 98 157 IPR002867 -
Bva10g00059 240 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 205 - -
Bva10g00059 240 ProSiteProfiles TRIAD supradomain profile. 13 240 IPR044066 -
Bva10g00059 240 SUPERFAMILY RING/U-box 16 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00059 Bva-Chr10 1882152 1883504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00059 3 204 C3H Transcription Factor Family AT2G19610 34.314 2.81e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00059 - - jre:108989645 320.857