Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00055 ATGGACTCATCGAGAGACTTTCAGTCGCTACTCTCCGAGCAACGCCGGGAACTGATGGCTGCAGAAGCCATGGAATCCGACTTCGAGCTCGCCTTTCGACTCCAATTGCAAGAAGCGCTCGATGCCTCTCTCGCTTTGGAGCCCTctgcttcttctccttcttcctccGTACGAGCACCCGAAATCACAAAAAACGATGACGTTTTGAAGGTCACGACCCTTCAGTCCGAGGAGCTGGCGAAGCTCAAGCAACAAATCAAGGACCGCGAGCAGAGTGAGATCGAAATGCGCAAACTCAAGGACGATCTCTGGCGTCGGATACATGATCAGAAGGTTGCCAGGGAGATTCTGAGAATCTCCGAGGATGATTGGAGAGAATGGGGTGACAATTTCGAGAAACCCTTGGGCGAGGGCTGTTCGAGCTCAAAGCAGGGATCTTTAGGGAGCAACGACGCCGTTTTTAGATTGTATTTCAGAGGGTTGGTGAGCCAGGAGATGATCAAGGGTAAAAAGACTGTTTTAGCGGGAATTGGGATTGCGATTTGTGACCCCATGGACAATTTGATATTCGAGGTGAGGAAACCACTGCTTGGGAATGGTTTGAGTAAAACTGCTGCAGAGGCTAAGGCTTTAATTGAAGGCCTTAACGCTGCTATTGCTTTGGACTTGAACCGTATCACATATTGTTGCACCTACTATCCACTGTACCAATTTGTGTGTGGAAGATGGCCTCCGAAACAGAGGAAGATTGCCATGCTGGTCAATCAGGTGACTCTgcttcaaagaaaatttaaatactgCAATCCAAAGCTTGTGCCTGGACTGGATGTTAAGTTTGCATTTAAGTTCGCAAAAGATGCAATTATGTCACAGATCACAATGCCTTCAGAATCTAGCTGTACAAAGAATCCTAATGAGACCTGTGTCATATGTTTGGAAGATACTGATGTTAGTCACATTTTTTCAGTTGATGGCTGTCAACACCGGTATTGCTTGTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTGTCATTGATAGCTGCAGGAAATTCTTGactcataaattaattgagaccATGCAGAATCAAATAAAGGAAGCATCGATTCCTGTTtctgaaaaaatttattgccCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGACCTTTTGGATTTTgctaaaaatatgtttggcGACGACCCCGAAAAATCAGGACCCAAGAAATGCATAAAATGTCATGGCCTTTTCTGTCTCAGCTGCAAGGTCCCTTGGCATAGTGGTCAGACATGCAGGGTTTACAAAATCTTGAATCCTAACCCTCCCGCTGAAGATGTTAAGCTGAAATCTCTCGCGACAAGGAGTTTATGGCGGCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTAATGAATTTTGCTATAACTGTGGAGCTGAATGGAAGAACAAGAAAGCAACTTGTTCTTGTCCACTTTGGGATGAGGACAATATTTGGTTGGAGAATCATGAGGAATCggaagaagaggaggaagaggagTATTATGAATCTgatgattattatta 1652 0.4153 MDSSRDFQSLLSEQRRELMAAEAMESDFELAFRLQLQEALDASLALEPSASSPSSSVRAPEITKNDDVLKVTTLQSEELAKLKQQIKDREQSEIEMRKLKDDLWRRIHDQKVAREILRISEDDWREWGDNFEKPLGEGCSSSKQGSLGSNDAVFRLYFRGLVSQEMIKGKKTVLAGIGIAICDPMDNLIFEVRKPLLGNGLSKTAAEAKALIEGLNAAIALDLNRITYCCTYYPLYQFVCGRWPPKQRKIAMLVNQVTLLQRKFKYCNPKLVPGLDVKFAFKFAKDAIMSQITMPSESSCTKNPNETCVICLEDTDVSHIFSVDGCQHRYCLSCMKQHVEVKLLHGMVPKCPHEGCNSELVIDSCRKFLTHKLIETMQNQIKEASIPVSEKIYCPYPRCSALMSKTDLLDFAKNMFGDDPEKSGPKKCIKCHGLFCLSCKVPWHSGQTCRVYKILNPNPPAEDVKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGNEFCYNCGAEWKNKKATCSCPLWDEDNIWLENHEESEEEEEEEYYESDDYY 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00055 550 Gene3D - 157 294 IPR036397 GO:0003676
Bva10g00055 550 Pfam Reverse transcriptase-like 170 287 IPR002156 GO:0003676|GO:0004523
Bva10g00055 550 SUPERFAMILY RING/U-box 304 387 - -
Bva10g00055 550 SMART ibrneu5 375 449 IPR002867 -
Bva10g00055 550 SMART ibrneu5 462 519 IPR002867 -
Bva10g00055 550 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 530 IPR031127 GO:0004842|GO:0016567
Bva10g00055 550 ProSitePatterns Zinc finger RING-type signature. 326 335 IPR017907 -
Bva10g00055 550 ProSiteProfiles Zinc finger RING-type profile. 308 352 IPR001841 -
Bva10g00055 550 Pfam IBR domain, a half RING-finger domain 467 517 IPR002867 -
Bva10g00055 550 Pfam IBR domain, a half RING-finger domain 383 449 IPR002867 -
Bva10g00055 550 Coils Coil 82 102 - -
Bva10g00055 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 386 IPR013083 -
Bva10g00055 550 ProSiteProfiles TRIAD supradomain profile. 304 529 IPR044066 -
Bva10g00055 550 Gene3D - 448 550 - -
Bva10g00055 550 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 530 - -
Bva10g00055 550 SUPERFAMILY RING/U-box 464 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00055 Bva-Chr10 1843465 1846408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00055 119 508 C3H Transcription Factor Family AT2G19610 32.915 2.17e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00055 - - qsu:112024501 769.615