Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00052 ATGGAGCAAAAAGGCAAGTGCCATCACTGTAAAAGTGAATTTCTTTGTAACTCAACCAGTCATGGGACAAATGGAATGCTAAAACACTTGAAAAGGCATCATAAGTGGATTTTTGTTGACAAGAATCAGTCACTTATAGGGGTTATAGAGGGTGAGGAAGATTTAGCAGGgagaaaaacaacaatttcTATCACCTATAATATAGAGGAAATTAAGAAAGCGCTTGctatttttgttatagaaGATGAGATGCCATTTAGTGTTGTTGAAGGGCGTGGGTTTCGTTATTTTGTGAATCGGTTGGAACCtaggtttattgtgccatctAGGAAAACTATTACAAGAGATTGTTACCAACTTTTTCTAGATGAAAAAAGTAAGTTAAAAGAGTTTCTTAAGAAGTCATGTGTGAGGGCTTGCTTGACTACAGATTGTTGGACAtccattcaaaatatttcctatATGTGTCTCACAActcattttattgatgaacaCTGGAGActtcaaaagagaattttaaatttctcacaaattGACAACCATAAGGGTGAGActataggaaaagaaattgataggtGTTTGAGGGAATGgggaattgaaaatatatttacaataaCTGTGGATAATGTTCCCTCTAATGATGTGGCCATTTCTTacttgaaaaggaaattgaagaattggAATGGTTTGGTATGTGAAGGAGAATATATGCATATGAGGTGTGCTGCtcacattttgaatttaattgtgaATGATGGGTTGAAAGACTTGAATCCATCCATTGTTCCTATCCGAAATGCCATCCGGTCTGTTAGGTCTTCTCCCCAATGcctccaaaaattcaaacaagctGCACATGCAGAAAAAATTAGTAGTGGAGCCTCTCTTTGCTTTGATGTTCCAATTGGGTGGAATTCCACCTACATTATGTTGGAACATGCTATACCATTTCAAAAAGCATTTGAGAGACTTGAGAATGAAGATGAGGGTTATGTCACTTGGGATAATGCTAGagcatttattcaatttttgaagttgttttATGAGGTGACCTTGACACTTTCTGGTTCTTTACATGTCACAACGAATTGtgcttttgatgaaattcaaacaattaatgaattattggtAAAGTGGAGTGAGAATGAAGCAAATTCTGTTTTGGGGACTATGGCatgtaatatgagaaataagtTTAATAAGTATTGGGGGAaggtagaaaatattaatccattaatttatattggcATCGTGTTGGATCCACAGTATAAACTTGAGtatgtgaattttatatatgatacaAATTATGAGATTGGGACAGCtactcttttgaaaaataagatagCAAACACATTGTGGCAGCTATACCATTTCTATGCACAAGAGTCACATGACGTATCTCAAACCTCTGATGATAGTGCAAGCCATGAAGGGTCAGTTATTACCAAGGAAGGTTTAGCAGACATGAGATGGgtgATGCCACTATCTGGTTTTCTAGTTAGCAAATTCTTAAGTTTGCCATCACATTATGCTGCAGGTTTAATATTAGTTGGTTGCTGCCTTGGTGTAACTGCGAGTAATATTGTTACTTATCTTGCACGGTATATCGATTCTCAAAATTTCCTTCACTCACTTTTGTTGCTTGTAAGAGTTAATGGTCTGATGACCTACTTGTTTTGCCAGTGGAAATGTGGCAGTTTCTGTGGTCAACCTAAGAGCCACTTGCTCACAACTGGCTGGAGCACATTTGTCACTTCGAAAAGATTAGTTGCTGGTGATGCTTTTGTGTTTCTAAGGGGAGAGAATGGGGAGCTGAGAGTTGGTGTCAGACGTCTTGCTCGGCAGCAGATCCCAATGCCTTCATCTGTAATATCAAGCCAAAGCATGCATCTTGtTGTCATTAGCCGATGGCACAATATGTATGGCTTGAAAAAATATCTTGAGGCAATGAACAAGAAGTTTTCTGTTGGTATGCGTTTCAAGATGAGATTCCAGGGGGAGGATTCACCCGAGAGAAGGTTCAGTGGGATGAACCAGCAAACCAGCAACAATTCAAAGGCCAGAGAGGGTTTGTCCTTGGGAGATAGAGCCTTTTGTAGCTTCTGCTGCCTCAAATCTCACCTAGCCAGCCATGAAGAGCAAAAGGTCCCGACCTCCTG 2159 0.3353 MEQKGKCHHCKSEFLCNSTSHGTNGMLKHLKRHHKWIFVDKNQSLIGVIEGEEDLAGRKTTISITYNIEEIKKALAIFVIEDEMPFSVVEGRGFRYFVNRLEPRFIVPSRKTITRDCYQLFLDEKSKLKEFLKKSCVRACLTTDCWTSIQNISYMCLTTHFIDEHWRLQKRILNFSQIDNHKGETIGKEIDRCLREWGIENIFTITVDNVPSNDVAISYLKRKLKNWNGLVCEGEYMHMRCAAHILNLIVNDGLKDLNPSIVPIRNAIRSVRSSPQCLQKFKQAAHAEKISSGASLCFDVPIGWNSTYIMLEHAIPFQKAFERLENEDEGYVTWDNARAFIQFLKLFYEVTLTLSGSLHVTTNCAFDEIQTINELLVKWSENEANSVLGTMACNMRNKFNKYWGKVENINPLIYIGIVLDPQYKLEYVNFIYDTNYEIGTATLLKNKIANTLWQLYHFYAQESHDVSQTSDDSASHEGSVITKEGLADMRWVMPLSGFLVSKFLSLPSHYAAGLILVGCCLGVTASNIVTYLARYIDSQNFLHSLLLLVRVNGLMTYLFCQWKCGSFCGQPKSHLLTTGWSTFVTSKRLVAGDAFVFLRGENGELRVGVRRLARQQIPMPSSVISSQSMHLVVISRWHNMYGLKKYLEAMNKKFSVGMRFKMRFQGEDSPERRFSGMNQQTSNNSKAREGLSLGDRAFCSFCCLKSHLASHEEQKVPTS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00052 719 SUPERFAMILY DNA-binding pseudobarrel domain 563 620 IPR015300 -
Bva10g00052 719 PANTHER BED FINGER-RELATED 63 482 IPR045259 -
Bva10g00052 719 SUPERFAMILY Ribonuclease H-like 126 477 IPR012337 -
Bva10g00052 719 SUPERFAMILY Hermes dimerisation domain 69 125 - -
Bva10g00052 719 MobiDBLite consensus disorder prediction 667 687 - -
Bva10g00052 719 Pfam Auxin response factor 643 682 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva10g00052 719 Pfam Sodium Bile acid symporter family 491 533 IPR002657 GO:0016020
Bva10g00052 719 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 63 482 - -
Bva10g00052 719 CDD B3_DNA 566 611 IPR003340 GO:0003677
Bva10g00052 719 ProSiteProfiles B3 DNA-binding domain profile. 561 613 IPR003340 GO:0003677
Bva10g00052 719 Gene3D - 548 612 IPR015300 -
Bva10g00052 719 Pfam Domain of unknown function (DUF4413) 355 459 IPR025525 GO:0003677
Bva10g00052 719 Pfam B3 DNA binding domain 562 611 IPR003340 GO:0003677
Bva10g00052 719 Gene3D - 490 538 IPR038770 -
Bva10g00052 719 Gene3D - 653 690 - -
Bva10g00052 719 MobiDBLite consensus disorder prediction 672 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00052 Bva-Chr10 1795912 1800230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00052 567 676 B3 DNA Binding Superfamily AT3G61830 60.465 3.30e-41 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva10g00052 DUF4413 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00052 - - ahf:112779081 508.834