LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva10g00041	ATGAATATGGATATAGCATGCAGCTTACCGCAGTCAAATATGTTACATAGTGGTGGTGGGACAAGTTACAAATACAAATTAGTGGATTTTGATTCTCGTGTTGGGTTCAGAAGTAGAGGTTTTGGTTATACGATTCTTCGTCACTCAAGGCCTATTTTGAAATCACGCTTAAGTGTTCCTTCTAGGAATTCAAGAGTAGGTTATGTTGGAGAGTTCGaagtttcaactttgaagaaaaCTTTGTCCTTTAAGGatcataatttctttaagTACTCAAGAGGAATATGGTCAAAGTGCCAGAGTAATGATTCTTTGGCTTATGTGGCTGGCAACGACCGAAGTGTAGATTATTTGGAAAGTCCAGATGGAGATCCTAGTATAGGAGCCACTTCTAGTGCTGAACTAAATGCATCCTCACAAGAAGGGCAAGTAGAAGTAGAGGCACCAAGTATTGACGAATTGAAAGAACAATTGCAAAAGGCCATAAAAGAACTAGAAGTTGCTCGAGTAAATAGTACCATGTTTGAGGAAAAGGTTAAAAAGATATCAGAAACTGCAATAGCTTTGCAGGATGAAGCAGCACATGCTTGGACTGATGTCAATTCTACTCTTGAGGCCATCCAACAAATGGTGAATGAAGAATATGTTGCCAAAGAAGCTGTTCAAAAAGCAACTATGGCTCTTTCATTAGCAGAGGCAAAGCTTCAGGTTGTGGTAGAATCCAAGGATGCTGCAAAAGGAGTGGATGATTCTCCACAAGTTGCTATCGAGAGCAATGAGGATAATGACATAGCAGAAGAGGAGAAAGTGTTTTTGATTGTTCAGGAAGAAATCAAGGAATGTCAGACAAGTTTGGCAAATTGTGAAGCGGAATTGAGGCGGATGCAGGATAAAAAGGAGGAGTTGCAGAAGGAAGTGCAAAGGTTGAATGAGATTGCAGAAACAACACAACTGAATGCATTAAAAGCAGAGGAGGATGTGACAAATATAATGCTTTTAGCAGAGCAAGCAGTTGCTTTCGAACTTGAGGCTGCGCAATGTGTGAATGATGCAGAAATTGCCTTACAGAGAGCAGAGAAGTCTCTCTCCAGTTCTAATGTTGATTCTCTAGATACTATTCAGGTACAAGATGCGGAGGCTGTTCTTGAGGAGGAGAAAGTGGTTGAGGGATTTTTTGGTGATATTGCTGTTGAAAAAGACACAGAATTATCCATTGATGATGAATCTTTGCATGTGAAACAATCAACAGAAACCTTATATGAGGAAACAAGCCAAATTTTGGAGGACTTAAATCAGCCTGATTATCTCAGTGACCATGATAATGGCCAGTTATGTTTAGACTCTTCTAAAGAAGCtgaaatggaagaagagaagTCAACGAATGCAGttcaagcaaaaaaaaaagaaacacagaaAGATTTGACCAGAGACAGTTCACCCTTAGCTCCCAAGGCATTATTGAAGAAGTCTTCCCGTTTCTTTCCAGCatcattcttctcttttcctgAAGATGGAACTGAGTTTACACCAGCATCAGTTTTCCAGGGTCTGTTGGAGTTGGTGAGGAAGCAAATGCCTAAGTTGGTTGTTGCGATTTTGTTAATGGGAGCAGGGGTTGCCTTCTATGCCAATCGAGCAGAAAGGAGTTCTATTGTACTTCAACAGACAGAGGTCATTGCCACCAGTGTTGAAGAAGTTTCCTCTAGTGCAAAACCCTTGTTTTGGCAATTGCAGAAAATCCCtaagagaattaaaaatattattgcatCGTTACCTCATCAAGAAGTGAATGAGGAGGAAGCCTCCCTCCTGGACATGCTCTGGTTGTTGCTTGCAAGTGTCATATTTGTgcctatttttcaaaaaattcctGGAGGTAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCCTGATTGGACCATATGGTCTCTCCATCATTCGTCATGTTCATGGGACAAAAGCAATAGCTGAATTTGGAgttgttttcttattattcAATATTGGCCTTGAGctcTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTCGGTTTAGGCTCTGCTCAGGTTTTAGTGACTGCTATAGTAATTGGATTGGTGGCTCATTATGTTTGTGGCCTGCCTGGTCCTGCGGCAATTGTCATAGGAAATGGCCTGGCGTTGTCATCCACTGCTGTTGTTCTGCAGgtGTTGCAGGAGAGAGGTGAGAGCACATCACGCCATGGGCGAGCTACATTTTCTGTGTTACTTTTTCAGGATTTGGCTGTTGTGGTCTTGCTAATACTTATTCCACTTGTTTCACCAAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATCGCTGAAGCTCTTGGACTGGCTGCTGTTAAGGCTGTAGTTGCAATCAGTGCCATAATTGCTGGTGGACGATTGCTTCTTCGGCCAATATATAAGCAGATTGCAGAAAATCAAAACGCAGAAATATTTTCTGCCAATACACTCCTAGTTATCCTTGGTACTAGTCTCCTCACAGCCAGGGCTGGACTGTCCATGGCATTGGGGGCATTCTTGGCTGGTTTGTTGCTTGCAGAAACTGAATTTTCTTTACAGGTTGAATCTGACATTGCTCCTTATCGTGGCCTTTTATTGGGGTTGTTCTTCATGACGGTGGGAATGTCaattgatcccaaacttcttgtTTCAAACTTTCCTGCCATCTCAGGGACATTGGGACTCTTAATTTGTGGCAAGACTTTATTGGTTGCTTTGGTTGGTAGGCTTTTTGGGATTTCACTCATTTCTGCTATAAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTTGTGGCTTTTGGTGACGCTGTTAATCAGGGCATAATGTCTTCCCAGCTGTCCTCTTTACTGTTTCTTGTTGTGGGAATTTCAATGGCCCTCACACCATGGCTAGCTGCTGGAGGCCAGCTGATAGCTTCCCGTTTTGATCTGCATGATGTTCGAAGCTTATTACCTGTAGAAAGCGAGACAGATGATTTGCAagatcatataattatttgtggaTTTGGACGTGTTGGGCAGATCATTGCACAACTTCTTTCTGAGCGATTGATTCCTTTTGTTGCACTAGATGTGAGAAGTGACAGAGTGGCAATGGGGCGTGCTCTGGATCTCCCTGTGTATTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAAATTGGGGCTGAGAGAGCTTGTGCTGCAGCGGTGACTCTTGATAGCCCTGGGGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTCCGCGCTCATGATGTTGATCATGGCTTGAATTTAGAAAAAGCCGGAGCTACAGCTGTTGTCCCAGAGACCTTGGAGCCAAGTCTACAACTAGCAGCTGCTGTGCTTTCTCAAGCTAAACTTCCAACATCGGAGATTGCAGCAACTATTAATGAATTCAGATCCCGCCATCTCGCTGAGCTATCAGAGCTTTGTGAATCAAGTGGAAGTTCTCTTGGTTATGGATTCTCTCGAGTCGTGAGCAAACCCAAATCTCAATCATCAGATCCATCAGATGAGAACCAAATGTCGGAAGGGACATTGGCAGTGTG	3623	0.4093	MNMDIACSLPQSNMLHSGGGTSYKYKLVDFDSRVGFRSRGFGYTILRHSRPILKSRLSVPSRNSRVGYVGEFEVSTLKKTLSFKDHNFFKYSRGIWSKCQSNDSLAYVAGNDRSVDYLESPDGDPSIGATSSAELNASSQEGQVEVEAPSIDELKEQLQKAIKELEVARVNSTMFEEKVKKISETAIALQDEAAHAWTDVNSTLEAIQQMVNEEYVAKEAVQKATMALSLAEAKLQVVVESKDAAKGVDDSPQVAIESNEDNDIAEEEKVFLIVQEEIKECQTSLANCEAELRRMQDKKEELQKEVQRLNEIAETTQLNALKAEEDVTNIMLLAEQAVAFELEAAQCVNDAEIALQRAEKSLSSSNVDSLDTIQVQDAEAVLEEEKVVEGFFGDIAVEKDTELSIDDESLHVKQSTETLYEETSQILEDLNQPDYLSDHDNGQLCLDSSKEAEMEEEKSTNAVQAKKKETQKDLTRDSSPLAPKALLKKSSRFFPASFFSFPEDGTEFTPASVFQGLLELVRKQMPKLVVAILLMGAGVAFYANRAERSSIVLQQTEVIATSVEEVSSSAKPLFWQLQKIPKRIKNIIASLPHQEVNEEEASLLDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAIVIGLVAHYVCGLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLVSPNSSKGGVGFQAIAEALGLAAVKAVVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPAISGTLGLLICGKTLLVALVGRLFGISLISAIRVGLLLAPGGEFAFVAFGDAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFDLHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAMGRALDLPVYFGDAGSREVLHKIGAERACAAAVTLDSPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLSQAKLPTSEIAATINEFRSRHLAELSELCESSGSSLGYGFSRVVSKPKSQSSDPSDENQMSEGTLAV	1207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva10g00041	1207	MobiDBLite	consensus disorder prediction	450	478	-	-
	Bva10g00041	1207	ProSiteProfiles	RCK N-terminal domain profile.	1011	1133	IPR003148	GO:0006813
	Bva10g00041	1207	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	3	1207	-	-
	Bva10g00041	1207	Gene3D	-	599	985	IPR038770	-
	Bva10g00041	1207	MobiDBLite	consensus disorder prediction	1184	1207	-	-
	Bva10g00041	1207	Coils	Coil	151	171	-	-
	Bva10g00041	1207	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	1008	1149	IPR036291	-
	Bva10g00041	1207	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	3	1207	-	-
	Bva10g00041	1207	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	610	890	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Bva10g00041	1207	Pfam	Sodium/hydrogen exchanger family	609	979	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Bva10g00041	1207	Pfam	TrkA-N domain	1012	1125	IPR003148	GO:0006813
	Bva10g00041	1207	Gene3D	-	1007	1171	-	-
	Bva10g00041	1207	Coils	Coil	278	326	-	-
	Bva10g00041	1207	MobiDBLite	consensus disorder prediction	450	475	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva10g00041	Bva-Chr10	1521252	1534875	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva10g00041	3	1207	Inorganic Solute Cotransporters	AT4G00630	67.918	0.0	1449

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva10g00041	-		-	gmx:100798822	1669.44