Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g00010 ATGGGATTTGGCGTCGCAACTGAAAGAATCATGGAAAGCTATACTAAATTGACTACTCGGAAGGCATTTAGAAGAATAAAAGTGGTCAATATTGATTTTCGAGATTTAGAATGGACGGATAAGATCAAGGATTGTCCTGTGTATTACCCTTCTGAACAAGAATTTGAGGATCCATTGGATTACCTGCAGAAGATTGCCAATGAGGCTTATCCATATGGAATATGCAAAATTGTTTCTCCCGTGAAAGCTTCGATTCCAGCTGATGTTGTTTTGAAGGATTTCAGGTTTATGACTCACGAACAGCCTCTTCGGCTTTCAAAATGGAACGAGAAAGACTTTATAGTATATAAACGTGGAAGAGAATACACTTATTCTGAATTTCAAGCTGTAGCAGGCAAAGCCTTCCGCAATCAATTTGATGGTTCTGAAGATATTCCTTCTGCATCATATGTAGAAAAGATGTTCTGGAAGGAAATGGCAAATGGAAAGAAGGCAACAGTGAAATATGGAGTCAATCTTGAAGGAAGTGCCTTTTCATGTGATCCTGATGACAAACTTGGGAAAAGCAAGTGGAACCTCAAGAATTTCTCTCGGCTGAAAAAATCCATATTGCGATTCATTCAAACACCAATTCCAgGAGTGACCGATCCCATGCTTTACATTGGAATGCTCTTCAGCATGTTTGCATGGCATGTAGAGGATCAATATCTCTACAgTATTAGCTATCTTCACTCAGGTGCATGTAAAACTTGGTATGGTGTGCCTAGTCGTGCAGCTTCTGACTTTGAAAATACTGTCAGAAATCATGTGTATTGCAAGGATATCATAATGGAACACAGTGAAGATTCTGCTTTTGAATTGCTTTCCAAGAAAACAACCATGTTTCCTCCTCAAATCTTGTTAAATCAACGCGTGCCGGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTCATAACTTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGCTTCAACTGTGGAGAAGCAGTAAACTTTGCTGTTAGTGGTTGGCTTCCATTTGGGGAGAAAGCTACCAAGCGTTATGGAAATCTAAGGATGCCACTTGTTGTTCCCTTTGAGGAACTTCTTTATAAAGGGGCAATGCAGTTTCCCAACTCCTCAACAATAAATCGTTTTGCACGCATGTACTTCTATAAGAACCTTATACGTATAAGGAACTTACCCTCTCCTTCAAATTCTCTAGGCACCATTTGTAGCAGAGCTGccaacaagagaaagagagaggctAGTTTGGAACTCAACACAGAAAATAGCAACAGGATTTTGAAGAAGCAtta 1325 0.3902 MGFGVATERIMESYTKLTTRKAFRRIKVVNIDFRDLEWTDKIKDCPVYYPSEQEFEDPLDYLQKIANEAYPYGICKIVSPVKASIPADVVLKDFRFMTHEQPLRLSKWNEKDFIVYKRGREYTYSEFQAVAGKAFRNQFDGSEDIPSASYVEKMFWKEMANGKKATVKYGVNLEGSAFSCDPDDKLGKSKWNLKVTIQILGLLGVTDPMLYIGMLFSMFAWHVEDQYLYSISYLHSGACKTWYGVPSRAASDFENTVRNHVYCKDIIMEHSEDSAFELLSKKTTMFPPQILLNQRVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAVSGWLPFGEKATKRYGNLRMPLVVPFEELLYKGAMQFPNSSTINRFARMYFYKNLIRIRNLPSPSNSLGTICSRAANKRKREASLELNTENSNRILKKH 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g00010 432 Pfam JmjC domain, hydroxylase 209 332 IPR003347 -
Bva10g00010 432 Pfam jmjN domain 46 78 IPR003349 -
Bva10g00010 432 ProSiteProfiles JmjC domain profile. 182 349 IPR003347 -
Bva10g00010 432 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 374 - -
Bva10g00010 432 Gene3D Cupin 39 353 - -
Bva10g00010 432 SMART cupin_9 175 349 IPR003347 -
Bva10g00010 432 ProSiteProfiles JmjN domain profile. 45 86 IPR003349 -
Bva10g00010 432 SMART JmjN_1 44 83 IPR003349 -
Bva10g00010 432 SUPERFAMILY Clavaminate synthase-like 176 365 - -
Bva10g00010 432 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 13 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g00010 Bva-Chr10 863351 866725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g00010 42 369 JUMONJI Transcription Factor Family AT2G34880 33.249 1.54e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bva10g00010 JmjC 5.2e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g00010 - - gmx:100793144 466.077