Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02166 ATGCCGCTTCCCACCAAAACCAGCAAGTTTCCTGCTCAGGATGGTGGCTTTGGTGCAATTAACAAGGACTCGGAAGATTCCGACACCCCATCCAACAACCTGTGGGTCGGGAATTTGTCGCCGGAGGTGACGGACTCCGATCTCATGGATCTCTTTGCCCAGTACGGAGCTCTCGATAGTGTCACCTCGTATTCGGCACGGAGTTACGCTTTCGTTTTCTTCAAGCGCATCGAGGATGCCAAAGCTGCTAAGAACGCGTTGCAAGGTGCACCTCTCCGTGGCAATCCCATAAAGATCGAATTTGCGAGACCGGCGAAGCCATGCAAACATCTATGGGTGGGTGGTATTAGCCCAGCTGTGACAAAGGAAGAATTAGAGTCTGAATTTCGCAGATTTGGGAAAGTTGAGGATTTTAAGTTTCTTAGAGACCGCAATTCTGCATGTGTTGAATACTTCAATCTGGAAGATGCTACCCAGGCCATGAAAAACATGAATGGGAAGCGTATTGGTGGGGAGCAGATTCGTGTTGACTTTCTCAGATCACAGTCTTCAAAAAAGGAAATGTTGCTTGATTATGGACAGACACAGGGAAAATTCATGGGGTCTACTGAGTCCTATACTGGACAGAAAAGGCCACAGCATTCACAACCTTTCCTTGGAAGAAAGGTGGATGGTCCACCATCCAATATACTGTGGGTAGGTTACCCTCCTTCCCTGCAGATTGATGAACAAATGCTTCACAATGCCATGATCTTATTTGGTGAAATTGAGAGAATTAAGAGCTTCCCTTCAAGGCATTATTCGTTCGTGGAATTTAGGAGTGTGGATGAAGCTCGGCGTGCCAAGGAGGGTCTTCAAGGTCGGCTTTTTAATGATCCTCGAATAACAATAATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTATCCTGGGATTTACCCTGGAAGTACAGGGCCAAGACCTGACATGTTCTTGAATGAGCCTTCATTTCGACCAGTACAGATGGATGTCTTTGGTCATAACCGTACAATGGTTGCAAATAATTTCAGTGGACAGTTAGCTGCCGGTGGTATCATTGGACCAAATGTTCCCTTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAATCTCCAATTTCAGGCGCTGAGTTTAATGATCTTGGAACACTCTCCAATGCAAGCTCTAAAAGTCAAATGGGTCCAAACTGGAAAAGGCTGTCTCCTCCCGCACCAGGGATGCTTTCTTCTTCAGTGCCAGGCATTAGGCCTCCTACCAAATCCTCATCTGGCGCATGGGATGTACTTGACATAAACCAATTTCAGAGAGATTCTAAACGTTCAAGGATAGATGGTGCTTTACCTGTTGATGACTCACCATTTCCTTTAAGAAATATTGATGATCGATCATTGGGACTAGAGCAACCATATGCAGTTGATCCAATTGTTGGTGGAGGGGGGTCCAGCCCTTATGTAAATATTCCAGGAAAGACTCACCTTAGTCCAATGAGAACCAGGATGGCAGCTGGAGTACCTAGTCCTGTTCAACCCGAAGTTGATAATATATGGCGTGGGATTATTGCTAAAGGAGGAACGCCTGTTTGTCATGCTCGCTGTGTCCCTATAGGGAAGGGGATTGGCACTGAGCTgcCTGAGGTTGTTGATTGCTCAGCCAGGACGGGATTGGATATGCTTACAAAACATTACGCTGATGCTACTGGATttgatattgttttctttttgcctgATAGCGAAGAGGACTTTGCTTCATACACTGAATTCCTTCGGTACCTTGGTGCAAAAGGCCGTGCTGGTGTGGCCAAATTTGCAGATGGAACCACCTTATTTTTGGTACCTCCCTCTGATTTCCTAAGAAAGGTTTTGAAAGTCACAGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACGAGTTCCAGGTAACACATCAGAACAGCAATCTGCACATTTTCCTATTCCTTCGTCTCAGTATATTGATAGGGACCATATTGCACCTTCACAACCTGAGTATGGCTTGATCCCTCCAAAAGAGGAACAAGTTATGGGAATGGATTATAACAGATTGTTGCACGAGGAATCTAGGCTTCCTCTGAAACCATCTTATCCTGTTACAAGTGTCCCCCCTTCTGTTCAGTCAGTAACTGCAGATTATGCCTCTGGTAATACTGCTTCTGCATCCCAATCTGGAGTTGCATTAACACCTGAGCTTATTGCCACTCTAGCTTCTTTACTTCCTTCAACTACGCAATCATCCCTGGATGGTGCTAAGTCAGCAATAGGCTCCTCAATTGTGAAGCCTTCTTTTCCTCCCGTCGCACCTACTGATGCAAACCAGTCTCATATTTGGAAACAGGATCATCAAATTGCAGACCAATCCAGCGTCACTCCTCAACAGTTGGGGAGTGTGTATAGTATCCAGGGTCCTCACTATCAGGCATATACACCTCCATCTACACATGCTCAAGTGGTCCCAGGAAGTTCTCATATACAAGGTTCTGCGTCCAGCTTGCCACAGCAGGGTTCCGTTTCATCTAGACCTGCCAATAATTTTATGGTACCATCTCAAAGTGGACAATTGGCTGTATCCCCCCCACAACCACAAGTCAGTCAGCCGTATCAAATTGATATTGGCCATAGTACTCAGAAAGGTTATGGAGTGGTGCAGGGAACAGATGCCTCTGGTTTATACAGTTCTCAAGGTTTTCAACAACCTAATAATTCTATTACTGCTGCTAATCAAGTTCACGGTTCTAATCCTTCACAACCTCAAACAGTCATGGCATATACAGCTGACAAAGTGAGCACAGACCTTCCTAGTCAGCAACTTCAATCCACCACTGTCTTTGGAGCTGGGCAGGGGACAACAGAAGTTGAGGCTGATAAGAACCAGAGATATCAGTCAACACTACAATTTGCTGCCAACCTTCTATTCCAAATACAACAGCAAACCCAAGGAGGAAGAGGGCCTGGAAATCAACAATG 3002 0.4527 MPLPTKTSKFPAQDGGFGAINKDSEDSDTPSNNLWVGNLSPEVTDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRIEDAKAAKNALQGAPLRGNPIKIEFARPAKPCKHLWVGGISPAVTKEELESEFRRFGKVEDFKFLRDRNSACVEYFNLEDATQAMKNMNGKRIGGEQIRVDFLRSQSSKKEMLLDYGQTQGKFMGSTESYTGQKRPQHSQPFLGRKVDGPPSNILWVGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIYPGSTGPRPDMFLNEPSFRPVQMDVFGHNRTMVANNFSGQLAAGGIIGPNVPLRPFGPQGSLESPISGAEFNDLGTLSNASSKSQMGPNWKRLSPPAPGMLSSSVPGIRPPTKSSSGAWDVLDINQFQRDSKRSRIDGALPVDDSPFPLRNIDDRSLGLEQPYAVDPIVGGGGSSPYVNIPGKTHLSPMRTRMAAGVPSPVQPEVDNIWRGIIAKGGTPVCHARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADATGFDIVFFLPDSEEDFASYTEFLRYLGAKGRAGVAKFADGTTLFLVPPSDFLRKVLKVTGPERLYGVVLKFPRVPGNTSEQQSAHFPIPSSQYIDRDHIAPSQPEYGLIPPKEEQVMGMDYNRLLHEESRLPLKPSYPVTSVPPSVQSVTADYASGNTASASQSGVALTPELIATLASLLPSTTQSSLDGAKSAIGSSIVKPSFPPVAPTDANQSHIWKQDHQIADQSSVTPQQLGSVYSIQGPHYQAYTPPSTHAQVVPGSSHIQGSASSLPQQGSVSSRPANNFMVPSQSGQLAVSPPQPQVSQPYQIDIGHSTQKGYGVVQGTDASGLYSSQGFQQPNNSITAANQVHGSNPSQPQTVMAYTADKVSTDLPSQQLQSTTVFGAGQGTTEVEADKNQRYQSTLQFAANLLFQIQQQTQGGRGPGNQQ 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02166 1000 MobiDBLite consensus disorder prediction 817 856 - -
Bva09g02166 1000 CDD RRM3_Spen 111 180 - -
Bva09g02166 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 104 IPR000504 GO:0003723
Bva09g02166 1000 CDD RRM3_Spen 34 103 - -
Bva09g02166 1000 CDD RRM3_Spen 231 300 - -
Bva09g02166 1000 SMART rrm1_1 33 100 IPR000504 GO:0003723
Bva09g02166 1000 SMART rrm1_1 230 298 IPR000504 GO:0003723
Bva09g02166 1000 SMART rrm1_1 110 177 IPR000504 GO:0003723
Bva09g02166 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 295 IPR000504 GO:0003723
Bva09g02166 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 175 IPR000504 GO:0003723
Bva09g02166 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 98 IPR000504 GO:0003723
Bva09g02166 1000 SUPERFAMILY RNA-binding domain, RBD 224 302 IPR035979 GO:0003676
Bva09g02166 1000 Pfam SPOC domain 518 633 IPR012921 -
Bva09g02166 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 181 IPR000504 GO:0003723
Bva09g02166 1000 Gene3D - 220 306 IPR012677 -
Bva09g02166 1000 MobiDBLite consensus disorder prediction 1 31 - -
Bva09g02166 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 302 IPR000504 GO:0003723
Bva09g02166 1000 MobiDBLite consensus disorder prediction 390 434 - -
Bva09g02166 1000 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 1000 - -
Bva09g02166 1000 Gene3D - 107 188 IPR012677 -
Bva09g02166 1000 Gene3D - 19 106 IPR012677 -
Bva09g02166 1000 SUPERFAMILY RNA-binding domain, RBD 29 184 IPR035979 GO:0003676
Bva09g02166 1000 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 22 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02166 Bva-Chr9 17907684 17917200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02166 31 292 Eukaryotic Initiation Factors Gene Family AT4G34110 25.436 1.63e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02166 - - gmx:100777570 1389.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g02166 09 17907684 17917200 Bva09g02166 09 17907684 17917200 ECH