Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02159 atggaCATAAGTCTTTATGCAGCTGCGAACAAAACAGACTTGAATTTCAATATTGTGTCCACGCAACAGCAGAGCAATACTAATGGTCATGAGGCTGCAGCCATAGTCATGCAGAGCAGCAACCATCAAAACAGCACTGATCACATATACGGGAGCCGTTCATCTGATTCCGGCGACGGTTGCGATGACGGAAAATGGGCCTCAAAGCTTCTCCGGGAATGTGCCAGAGCAATCTCAGACAGAGACTCCACCAAAATCCACCATCTTCTATGGATGTTGAACGAGCTCGCTTCCCCTTATGGTGACTGTGATCAGAAATTAGCTTCTTATTTCTTGCAGGCCCTTTTCTGCAAAGCTACAGAATCTGGTCAACGGTGCTATAAAACTCTGACCACGGTGGCTGAGAAAAACCACTCCTTCGATTCAGCCAGAAAGTTAATCCTCAAATTTCAAGAGGTAAGCCCGTGGACAACTTTTGGACACGTAGCTTCAAACGGTGCTATTCTAGAAGCCTTAGAGGGTGAGACCAAGCTTCACATAATTGACATAAGCAACACTCTTTGCACTCAATGGCCTACTCTATTAGAAGCCTTGGCCACCAGAAACGATGAAACGCCCCGTTTGAAACTCACCGTGGTTCTAACTAGGAGCATGACAGGATCGTCTGTGAGTGTGATGAAGGAAGTGGGGCAAAGAATGGAGAAGTTTGCTAGGTTAATGGGAGTTCCCTTCGAGTTTAATCCAGTTTCGGGGTTAAATCATTTGGGTGAGCTCACCAAAGAGGGCTTAGGAGTTCAAGAAGATGAAGCTGTTGCTGTGAATTGTATTGGGGCATTCTCTAGGGTTGAAATGGAGGATAGGGCTTCTGTGATTCGCTTGTTCAAGTCTCTGAATCCTCGTGTCGTGACAGTTGTCGAGGAAGAAGCTGATTTTTGCAGCTCAAGAGATGATTTTGTGAAGAACTTTGAAGAGTGTCTCAGGTTTTACACTCTCTACTTTGATATGTTACAAGAGAGCTTTCCCCCTACGAGTAATGAAAGATTGATGCTTGAGAGGGAGTGTTCGAGAAACATCGTTAGGGTTTTGGCTTGTGGGGATGAATTAGAATTAGGTGGTGGTAGTGgtggtgatgatgatgatcatGATCACGGTCATGGTGGTGAGtgtgaaagaagagagagaggaaggcAATGGTCTGAGAGGTTCAAAGAGGTGTTTTCTCCAGTTGGGTTCAGTGATGATGTTGTTGATGATGTGAAGGCATTGCTCAAGAGATACAGAACTGGTTGGTCACTTGTGTTGCCTCAAGCTAATTTAGATCATTATCATGATCTAACTGGAATTTACTTGACATGGAAGGATGAACCAGTAGTTTGGGCCTCAGCATGGAAACCCTA 1397 0.4338 MDISLYAAANKTDLNFNIVSTQQQSNTNGHEAAAIVMQSSNHQNSTDHIYGSRSSDSGDGCDDGKWASKLLRECARAISDRDSTKIHHLLWMLNELASPYGDCDQKLASYFLQALFCKATESGQRCYKTLTTVAEKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDETPRLKLTVVLTRSMTGSSVSVMKEVGQRMEKFARLMGVPFEFNPVSGLNHLGELTKEGLGVQEDEAVAVNCIGAFSRVEMEDRASVIRLFKSLNPRVVTVVEEEADFCSSRDDFVKNFEECLRFYTLYFDMLQESFPPTSNERLMLERECSRNIVRVLACGDELELGGGSGGDDDDHDHGHGGECERRERGRQWSERFKEVFSPVGFSDDVVDDVKALLKRYRTGWSLVLPQANLDHYHDLTGIYLTWKDEPVVWASAWKP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02159 465 MobiDBLite consensus disorder prediction 374 392 - -
Bva09g02159 465 Pfam GRAS domain family 389 464 IPR005202 -
Bva09g02159 465 Pfam GRAS domain family 69 365 IPR005202 -
Bva09g02159 465 ProSiteProfiles GRAS family profile. 58 464 IPR005202 -
Bva09g02159 465 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 464 IPR005202 -
Bva09g02159 465 PANTHER PROTEIN SHORT-ROOT-LIKE 40 464 - -
Bva09g02159 465 MobiDBLite consensus disorder prediction 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02159 Bva-Chr9 17853839 17855547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02159 42 465 GRAS Transcription Factor Family AT4G37650 50.342 4.00e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bva09g02159 GRAS 9.2e-82 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02159 - - pop:112324651 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g02223 02 22337484 22339127 Bva09g02159 09 17853839 17855547 BWGD