Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02118 ATGGACTCCGAGGATGATATGCACGACGCCAACGATATTGAGTCCCTTGATGACGATTTCTACAGCGGTGAGACCGAGGATGCTCCCATGGATTATTACAGCGACTACTATGATGAGCCAGATGATTACTTTGATGATGCTGATGATTCCGATAGGATTGAATCTCGTCGCCCTGAGCAAAACTTTACCATCTTGAAGGAGTCAGACATCCGGCAAATGCAGGAAGATGATATCACTAGAGTCGCAACAGTTCTTTCCATATCTCGGGTTGCTGCGAGTATCTTACTTCGTCATTACAATTGGAGTGTTACTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCATGTGAGAAAAACAGTTGGCTTGTTGGAGAAGCCAGTTGTGCAGTTTCCTAATGCTAGGGAGCTGACTTGCGGTATCTGTTTTGAAAGTTATCCACGTCCACGGATTGAATCTGCTGCTTGTGGTCATCCATATTGTATTTCATGCTGGGCAGGTTATATTAGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTATTATCATCAGATGAGGATAAGGAGAAGTATGCCCGTTATCTTCTTCGGTCTAATGTTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCACCAGGTTGTGAGTATGCTGTCACTTTTGATGCTGGCAGTGGAAATTATGATGTTTCATGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACTGAGGAGGCTCACCGTCCAGTGGACTGTGGTACTGTTGCTAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAATATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAGGGTTGCATGCACATGACTTGTACTCCACCttgtaaatttgaattttgctgGTTATGCATTGGTGCATGGTCAGACCATGGTGAAAGGACAGGTGGTTTCTATGCTTGCAATCGTTATGAGGCTGCTAAACAAGAAGGAGTGTATGATGAGactgaaagaagaagagaaatggCTAAGAATTCCTTGGAGAGATATACTCATTATTATGAGCGTTGGGCTAGTAATCAATCTTCAAGGCAAAAAGCTCTTGCGGATCTACATCAGATGCAGACTGTGCATATTGAGAAGCTAAGTGACACACAGTGTCAACCTGAGTCACAGCTCAAGTTCATAACTGAAGCCTGGCTACAgATAGTTGAATGCAGGCGTGTTCTGAAGTGGACATATGCTTATGGGTACTATTTGCCGGAGCATGAGCATGctaagaaacaattttttgagTACTTACAAGGTGAGGCAGAATCGGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAACAGTACCTCAATGCTGAGGGTCCATCTAAAGAATTCAATGACTTCCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGGAACTACTTCGAGAATTTGGTCAGGGCATTAGAGAATGGTTTAGCTGATGTGGATTGCAGTGGGGCAGCTTCCAGCAAAGCCACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGAGGTGGAAGAGGAAAGGGTGCTGCTACCCGAAGCAGCAGTTCCAACAGAATGACTGATGATAATTTTTGGTCTTGTGAACATTGTACATATGCTAATCCCAAATCTGCAGCCACATGCACCATGTGCCAGCAACAACGTCGGTG 1778 0.4303 MDSEDDMHDANDIESLDDDFYSGETEDAPMDYYSDYYDEPDDYFDDADDSDRIESRRPEQNFTILKESDIRQMQEDDITRVATVLSISRVAASILLRHYNWSVTKVHDAWFADEDHVRKTVGLLEKPVVQFPNARELTCGICFESYPRPRIESAACGHPYCISCWAGYISTSINDGPGCLMLRCPDPTCGAAVGQDMINLLSSDEDKEKYARYLLRSNVEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCIGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDCSGAASSKATSSKNAAGSSKGRGGGRGKGAATRSSSSNRMTDDNFWSCEHCTYANPKSAATCTMCQQQRR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02118 592 Pfam Ariadne domain 357 519 IPR045840 -
Bva09g02118 592 ProSiteProfiles Zinc finger RanBP2 type profile. 564 592 IPR001876 -
Bva09g02118 592 Gene3D - 562 592 - -
Bva09g02118 592 Gene3D - 266 521 - -
Bva09g02118 592 SMART ibrneu5 274 344 IPR002867 -
Bva09g02118 592 SMART ibrneu5 208 270 IPR002867 -
Bva09g02118 592 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Bva09g02118 592 SUPERFAMILY RING/U-box 208 277 - -
Bva09g02118 592 MobiDBLite consensus disorder prediction 526 562 - -
Bva09g02118 592 MobiDBLite consensus disorder prediction 1 48 - -
Bva09g02118 592 MobiDBLite consensus disorder prediction 526 540 - -
Bva09g02118 592 SUPERFAMILY RING/U-box 289 337 - -
Bva09g02118 592 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Bva09g02118 592 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Bva09g02118 592 MobiDBLite consensus disorder prediction 1 51 - -
Bva09g02118 592 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Bva09g02118 592 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Bva09g02118 592 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Bva09g02118 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 222 IPR013083 -
Bva09g02118 592 SMART zf_4 566 590 IPR001876 -
Bva09g02118 592 SUPERFAMILY RING/U-box 135 217 - -
Bva09g02118 592 SUPERFAMILY Ran binding protein zinc finger-like 564 591 IPR036443 -
Bva09g02118 592 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
Bva09g02118 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02118 Bva-Chr9 17573733 17582351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02118 17 591 ARIADNE family AT1G65430 70.307 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02118 K11968 - gmx:100810427 1086.25