Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02100 ATGGAAGAATCCACCACCATGCCAAACTGCGTCGTTTCTCCACCATCCTACCACGGAGTCCGCAAGCGAAAATGGGGCAAATGGGTGTCTGAAATTCGCGAACCAGGCAAGAAAACCCGGATATGGTTAGGGAGCTATGAGGCACCGGAAATGGCAGCGGCAGCTTATGATGTTGCGGCTCTGCATCTCCGAGGGCGCGCGGCGAAGCTTAATTTCCCCGAATTGGCTGAGAGCTTACCCCGGCCGGCGAGCTCAAGAGCTGAGGACGTGCAATTGGCGGCTCAACAAGCGGCATTAAGGTTCAGGAGACCGGTGCGAGGGTCACCGGAGACGGGCAGCGCAAGTTTGGTTCCAGCGACGGTGAGGTTGTCACCGAGCCAAATTCAAGCCATTAATGAGTCACCATTGGATTCACCGAAGATGTGGATGCAAATGGCTGAGGCTCTCATGTTGGGCTTTGATGAGTCTATGGTATTGAACCATGAATCAGATTACTTCACTGAATGGGAGGGAATGGAACAACATTCCTTATGGGACCCCTA 542 0.5351 MEESTTMPNCVVSPPSYHGVRKRKWGKWVSEIREPGKKTRIWLGSYEAPEMAAAAYDVAALHLRGRAAKLNFPELAESLPRPASSRAEDVQLAAQQAALRFRRPVRGSPETGSASLVPATVRLSPSQIQAINESPLDSPKMWMQMAEALMLGFDESMVLNHESDYFTEWEGMEQHSLWDP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02100 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 178 - -
Bva09g02100 180 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Bva09g02100 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 15 178 - -
Bva09g02100 180 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Bva09g02100 180 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Bva09g02100 180 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Bva09g02100 180 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Bva09g02100 180 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Bva09g02100 180 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Bva09g02100 180 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02100 Bva-Chr9 17388390 17388988 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02100 14 180 AP2-EREBP Transcription Factor Family AT1G71450 52.023 2.10e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva09g02100 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02100 - - qsu:111995063 218.779