Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02064 ATGCCGGACTATGACGAGAGGTACGAAGGTAATGAAGAGGACGTTGAAACCTATGAAGGTGGTTCCTCTCCTCAACCTCGAGAGAGTGGCCATGGTGGTCCTGACGATCACAGCAACTCCAAATCCCATCATGGATCTCGTGATTATGATAGAGAATCTTCAAGAAGTAAGGAAAAGGAACGAGATAAAGGGAGAGATAaggagaggaagagagaaaaggagaaagataGGGATAGGGAGAGAAGCAGGGATAGAGATGGGGAAAGAAGCAGGGACAGGGAGAGAGACGGAGAGAGAAGCAGAGATAGGGAAAAAAGCAAAGACAGGGAAAGAGATAGGGACCGGGAGCACCAGAGAGATCGACACAGGGACCGAAGTGAAAGGAGGGATCGGGGTAGGGATagagatgatgatgattattACCGAAGCCGGGACTTTGACagACGGAGGGACTATGATAGAGATAGAGAGGATAGACACAGGGGCAGGTCCCGTTCACGTTCAGGGGTTATATCTGAGCATAGATCAAGGTCACGTTCTCGTTCACGCTCAAAGAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCTGCTATGTTAGCAAATGCTGCCGCTGCTGCTGCAGGTCAGATCCCTGGGACAAGTCCTGCAATTCCTGGCATGTTTCCAAACATGTTTCCATTGGCCACCAGTCAGGTGCAACCATTTGGTGCTCTCCCTGTCATGCCAGTTCAGGCTATGACACAGCAGGCTACTAGACATGCTAGGCGAGTTTATGTTGGAGGACTCCCGCCTACTGCAAATGAACAGTCAGTTGCAACTTTTTTTAGTCAGGTTATGGCTAAGATTGGAGGAAACACTGCTGGTCCAgGTGATGCAGTTGTTAATGTTTATATCAACCATGACAAGAAGTTTGCATTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTCTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAAGTGAGGAGACCTACTGATTACAATCCTTCTTTAGCTGCAACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTGGCAGCTGTTGGCTTAACTCCTGGCTCAGCTGGTGGGCTTGATGGCCCCGATCGCATTTTTGTGGGGGGCCTTCCTTATTACTTTACAGAAACACAGATTAGGGAGCTATTGGAGACATTCGGTCCCCTTCGAGGTTTTGATTTAGTGAAAGACAGAGAAACAGGAAACTCGAAAGGCTATGCATTTTGTGTTTACCAAGACCTTGCGGTTACTGATATTGCTTGTGCAGCTCtgaatggaataaaaatggGAGATAAGACTCTTACTGTTAGAAGAGCTAACCAAGGTGCTAACCAGCCTAAACCTGAGCAAGAGAGCATATTAATGCATGCACAGCAGCAGATCGCACTGCAGAAACTCATGCTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTCAAGCAGTATCTGCCGATGAGCTCAAAGACGATGAGGACTATGAAGAGATTGTTGAAGATATGAGACAGGAGTGCTTAAAATTTGGTAATTTGGTGAATGTTGTGATCCCTCGCCCAAATCCAAATGGTGAACCATCGCCTGGAGTGGGGAAGGTGTTTTTGGAGTATGCTGATGTTGAGGGATCTACAAAGGCTCGTTCTGGATTGAATGGACGAAAATTTGGAGGGAATCAAGTCGCAGCTGTCTTTTATCCTGAGAACAAATTTGCTCAGGGAGATTACGATGGCTA 1778 0.4556 MPDYDERYEGNEEDVETYEGGSSPQPRESGHGGPDDHSNSKSHHGSRDYDRESSRSKEKERDKGRDKERKREKEKDRDRERSRDRDGERSRDRERDGERSRDREKSKDRERDRDREHQRDRHRDRSERRDRGRDRDDDDYYRSRDFDRRRDYDRDREDRHRGRSRSRSGVISEHRSRSRSRSRSKSKRTSGFDMAPPASAMLANAAAAAAGQIPGTSPAIPGMFPNMFPLATSQVQPFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTQAVSADELKDDEDYEEIVEDMRQECLKFGNLVNVVIPRPNPNGEPSPGVGKVFLEYADVEGSTKARSGLNGRKFGGNQVAAVFYPENKFAQGDYDG 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02064 592 SUPERFAMILY RNA-binding domain, RBD 243 344 IPR035979 GO:0003676
Bva09g02064 592 SUPERFAMILY RNA-binding domain, RBD 379 581 IPR035979 GO:0003676
Bva09g02064 592 MobiDBLite consensus disorder prediction 1 195 - -
Bva09g02064 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 341 IPR000504 GO:0003723
Bva09g02064 592 Gene3D - 486 591 IPR012677 -
Bva09g02064 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 456 IPR000504 GO:0003723
Bva09g02064 592 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 591 - -
Bva09g02064 592 PANTHER RNA-BINDING PROTEIN 1 591 - -
Bva09g02064 592 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 71 590 IPR006529 GO:0003723|GO:0005634|GO:0006397
Bva09g02064 592 CDD RRM3_U2AF65 490 578 - -
Bva09g02064 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 449 IPR000504 GO:0003723
Bva09g02064 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 334 IPR000504 GO:0003723
Bva09g02064 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 575 IPR000504 GO:0003723
Bva09g02064 592 SMART rrm1_1 259 337 IPR000504 GO:0003723
Bva09g02064 592 SMART rrm1_1 492 578 IPR000504 GO:0003723
Bva09g02064 592 SMART rrm1_1 379 452 IPR000504 GO:0003723
Bva09g02064 592 SMART rrm2_1 492 578 IPR003954 GO:0003676
Bva09g02064 592 SMART rrm2_1 259 337 IPR003954 GO:0003676
Bva09g02064 592 Gene3D - 253 354 IPR012677 -
Bva09g02064 592 CDD RRM1_U2AF65 257 339 - -
Bva09g02064 592 CDD RRM2_U2AF65 378 454 - -
Bva09g02064 592 MobiDBLite consensus disorder prediction 30 177 - -
Bva09g02064 592 Gene3D - 369 474 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02064 Bva-Chr9 17003934 17010866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02064 380 571 Eukaryotic Initiation Factors Gene Family AT1G22760 26.396 1.91e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02064 K12837 - gmx:100779915 746.117