Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02054 ATGGCTCGCGGAAAGGTTCAGATGAAGCGAATCGAAAACACAGTGCACAGACAAGTTACCTTCTGCAAGCGCCGAGCAGGGCTTCTTAAAAAGGCTAAGGAGCTCTCCGTGCTTTGCGATGCTGAAATTGGCGTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTCATAGAGAGGTACAAGCAATCCACCCATAGGGCTATGCCTGAAGCTGACATGGAAGCACATCCTCTGGAATATAAAGAGGATACTGATGTGCTCAAACAAGAAATTGGATCGCTGCAAACGGATCTCagGTATTTATATGGAGGGGCAATTGGGACGATGTCAATGAACGAATTACAAGATCTGGAGAAGAATCTTGAAATCTGGATTTATCATATTCGTTCAATGAAGATGAACATGATGTTACAAGAAATCCAAACATTGAAGGATAAGGAAGGAGTACTCACAGCTGCAAATGAATATCTCCGAGATAAGATGGTGGAGAACACTGTAATTCCCAACTTTGCACCATTTGGAACTGCTACTTCATATCCACTAACCATACAGGATGAAATATTCCAGGTCTA 602 0.4319 MARGKVQMKRIENTVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELATKGTMQGLIERYKQSTHRAMPEADMEAHPLEYKEDTDVLKQEIGSLQTDLRYLYGGAIGTMSMNELQDLEKNLEIWIYHIRSMKMNMMLQEIQTLKDKEGVLTAANEYLRDKMVENTVIPNFAPFGTATSYPLTIQDEIFQV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02054 200 Pfam K-box region 89 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g02054 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bva09g02054 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 - -
Bva09g02054 200 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Bva09g02054 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Bva09g02054 200 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g02054 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bva09g02054 200 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02054 Bva-Chr9 16909691 16914874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02054 1 199 MADS-box Gene Family AT1G71692 58.571 2.54e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva09g02054 K-box 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02054 - - gmx:100783345 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g02054 09 16909691 16914874 Bva09g02054 09 16909691 16914874 ECH