Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g02026 ATGGGGAGGGGCAAGATTGAAATCAAAAGGATTGAGAACACTACTAATCGTCAGGTTACCTTCTGCAAGAGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTATCAGTGCTATGTGAAGCTGAAGTTGCCCTTATTGTCTTCTCCAGCCGTGGACGCCTCTACGAGTATTCAAACAACAACAGCATAAGGTCAACCATAGAGAGGTACAAAAAGGCTTGTTCTGATAACTCAAATGCGAGCTCTACTATTGAAATCAATGCTCAGTACTATCAACAAGAATCTGCAAAGCTACGACATCAAATTCAGATGCTGCAAAACTCAAACAGGCACTTGATTGGTGATGCCTTGAGCACATTGACTGTGAAGGAACTCAAGCAACTTGAGAATAGACTTGAAAGAGGAATCAGTAGAATCAGGTCCAAGAAGCATGAGATGCTGTTGGCCGAAATCGAATATTTGCAGAAAAGGgagattgaaatggaaaatgaaaatctctGCCTTCGAActaaggtAGCAGAAGTTGAGAGGCTCCAGCAAGCAAACATGGTTTCTGCACCAGAGCTGAATGCCATTCAGGCATTAGCTTCACGCAATTTCTTCAATCCAACCATGATTGAAGATGCATCTGCATATCCACAACCTACAGACAAGAAGATTCTTCATCTTGGGTA 674 0.405 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSNNNSIRSTIERYKKACSDNSNASSTIEINAQYYQQESAKLRHQIQMLQNSNRHLIGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYLQKREIEMENENLCLRTKVAEVERLQQANMVSAPELNAIQALASRNFFNPTMIEDASAYPQPTDKKILHLG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g02026 224 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bva09g02026 224 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 2 213 - -
Bva09g02026 224 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Bva09g02026 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g02026 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 213 - -
Bva09g02026 224 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bva09g02026 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva09g02026 224 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g02026 224 Coils Coil 122 145 - -
Bva09g02026 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g02026 Bva-Chr9 16623070 16633528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g02026 1 224 MADS-box Gene Family AT4G09960 73.593 1.98e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva09g02026 K-box 6.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g02026 K09264 - gmx:100301905 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g02026 09 16623070 16633528 Bva09g02026 09 16623070 16633528 ECH