Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01983 ATGTCAGAAAGAATGAGAAATGGTCGCCGAAAGATTGAGATTAAGAAGATTAGCAGAAAGAGCAATTTGCAGGCTAGTTTCTCGAAGCGACGCTATGGATTTTTCGAAAAGGCTAGTGAGCTTAGTACCCTTTGTGGTGCAGAAGTTGCTGTAATTGCCTTTTCACCGGGCGATAAGGTCTTTTCTCTTGGCTATCCATGCGTTGATTCGGTTCTAGAAAACTTCAATCAATTCCCTAATCAAAGCAATGCTACCATTCAACAAATTCAGCATGATGCTATGCCAATGCCAATGCTAACCTACATTACCTCAATGCACAAATCACTGAAATTAATGACCAGCTTGATCAAAAGAATAAGCATGGGAAAGAACTCGAAAGAACCCTG 386 0.4067 MSERMRNGRRKIEIKKISRKSNLQASFSKRRYGFFEKASELSTLCGAEVAVIAFSPGDKVFSLGYPCVDSVLENFNQFPNQSNATIQQIQHDAMPMPMLTYITSMHKSLKLMTSLIKRISMGKNSKEP 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01983 128 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Bva09g01983 128 SUPERFAMILY SRF-like 8 81 IPR036879 GO:0003677|GO:0046983
Bva09g01983 128 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Bva09g01983 128 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Bva09g01983 128 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Bva09g01983 128 PANTHER MADS BOX PROTEIN 7 114 - -
Bva09g01983 128 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 7 114 - -
Bva09g01983 128 Gene3D - 19 92 IPR036879 GO:0003677|GO:0046983
Bva09g01983 128 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Bva09g01983 128 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01983 Bva-Chr9 16133561 16133947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01983 8 75 Type I MADS-box Gene Family AT5G60440 66.176 9.29e-27 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01983 SRF-TF 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01983 - - thj:104809103 102.449