Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01942 ATGTCTACTCACCATGAAGCTAAGGGACAAGGAGTTTCCTCCTTTCACAGAAAGAGCAATGCAAAATCAACCTTTGATGGTAATGGCGACCAAAATGAAAACGAGACGTGTCAATTAACTATGCCGGAGGATGACCACGAGCGTGTGCCACTGGCCAACGTGGCGAGGATAATGCGTCAAGTTCTTCCACCGCATGCAAAAATATCAGACGACGCCAAAGAAACAATTCAAGACTGTGTTTCTAAGTACATCAACATAATTACTGCTAAAGCCAACAAACGGTGCTTCGACGATAGCCGTGTGAAGGTAACGGCTGAGGATGTGCTGCTGGCAATGGAGGAACTTAAACTGGACCAGTACGTGGATCCTCTCAAAGTTTTCCTCACTCGCTACCGTGAAAATGAGAATAACAGCTCTTGCATGCATGGGAATGGCGGGAAGAGGGGCTGCTACCATGATGACTATGGGCCTCCAACTGGGCTTCCTCAAACATTGGAAGCTAGTTATGGGCCTCAAAATGGTCTTCCTCTAACAATGTTGGGTACTTATGGGCCACCATCTTCTATGGGCCCAAATCAAAATTCCAGTGTTTTCGATCCTGTGGCTATGAGCAACTTTCCGGGTGGCGTTGGGAGTTCATCTTTTCTTGATACTTCGGCTAACTTTGATCCCTTTGCTCACCTTAAATG 689 0.4659 MSTHHEAKGQGVSSFHRKSNAKSTFDGNGDQNENETCQLTMPEDDHERVPLANVARIMRQVLPPHAKISDDAKETIQDCVSKYINIITAKANKRCFDDSRVKVTAEDVLLAMEELKLDQYVDPLKVFLTRYRENENNSSCMHGNGGKRGCYHDDYGPPTGLPQTLEASYGPQNGLPLTMLGTYGPPSSMGPNQNSSVFDPVAMSNFPGGVGSSSFLDTSANFDPFAHLK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01942 229 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 21 158 - -
Bva09g01942 229 Gene3D Histone, subunit A 37 149 IPR009072 GO:0046982
Bva09g01942 229 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 158 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva09g01942 229 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
Bva09g01942 229 SUPERFAMILY Histone-fold 48 153 IPR009072 GO:0046982
Bva09g01942 229 MobiDBLite consensus disorder prediction 1 38 - -
Bva09g01942 229 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Bva09g01942 229 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Bva09g01942 229 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Bva09g01942 229 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01942 Bva-Chr9 15585063 15587995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01942 27 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 46.795 4.72e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva09g01942 CBFD_NFYB_HMF 2.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01942 K08065 - tcc:18593281 147.902