Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01931 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTCACTCTATTGGACACTGGGTCTACGCAAGCCACAAGGTTGACTGCTGCTCGGCAGATTGGGGACATTGCAAAGTCACATCCTCATGACTTGAACGGTCTTTTAAAGAAGGTTTCTCAATTTCTACGCAGTAAAAATTGGGATACAAGAGTTGCTGCAGCTCATGCAATTGGGGCTATTGCTGAAAATGTTAAGCATTCATCTTTGGCTGAACTCTTTTCTTCTGTTGAATTACAAATGTCTGAGGCTGGAATGTCTGGTAGTCATGAAGATTTGCTTGCTTGGCCCTACTTTGGATCTAATATTACTGGGAACTCATTTAGAAgCTTTGATATCAACAAGGTGCTTGAATTTGGCGCTTTATTAGCATCTGGAGGACAGGAGTATGACATTGGAAGTGACAATGCAAAAAATCCAAAGGAGAGATTGGCTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTGTGTGAACAATTTATGGATATCAATGAAATGATAAGAGATGAAGATCTTATGTCACACAGATCAGATTCACGTCTAAATGGGATAGATCAAAGAGTTTTCACTTCTCATTCTGTACATAACATCCAGAAAATGGTTGCAAATATGGTTCCTGTCAAATCAAAATGGCCGAGTGCAAGAGAACTGAATCTTCTGAAACGtaaagcaaaaacaaactCGAAAGACCAAACAAAGAGCTGGTGTGAGGATGGAATTACAGAGGCGTCCTTTGCTCCTAATATGACTTCTAAAGGCGCATGTCCTGATTCTGTTAGCCGTGATACGACATTCTCGGATGGTAGTCATGATGAAGATGGCTTTGAGCAAGATGGGAATGGAGGATGGCCTTTCCACACTTTTGTTGAGCAACTTATCCTTGATATGTTTGATCCTGTTTGGGAGATACGGCATGGCAGCGTTATGGCATTGAGAGAGATTTTAACACATCAAGGTGGTTCTGCGGGAGTATTTAAACCAGACTCTCGCTTGAATAGGACATTATTTGTTGAATCAGCAGACAAAAGTATTTCAAATGCATTgaagagagaaagggagatTGATTTGAATATGCAAGTCTCGGTAGACGAGTTCAATTCGAATTTTAAGAGGCCAAAGTTTGAAGATGTATCATCATGCACCTCTTTGGACAGCACAATTACATGTAGCAATTCTAATGATGTTGAGATTAGCATTAGTGCAAATGCCTATGGATCCAATTTGCCTTTGGATTGCGGGAATGGTCAATACAATGGTATTCTAGTTGACATGGAGATGGAATCTTGCCGTGAGGGTCTACATTATTCGAGCAAGGAAGCTACCACTATAGAAGAGCAGAAAAGGTTTTCTGATGACAATAAGGTTTCCTATGGTAATCTTGATGTCCTAAGAAATCTTCCTCAGAATTCTGAActgatgaacttggttaaagtggcAAGAAATTCCTGGCTTCAAAACCTTCAATTCCTACAAGATTGTGTAATACGCATCTTGTGTGTTTTGTCACTTGACCgCTTTGGAGATTACGTATCTGATCAGGTTGTTGCCCCTGTACGTGAAACCTGTGCACAGGCATTAGGTGCTGCTTTTAAGTACATGCATCcagcattaattaatgaaacattaaatatattgcTGAAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGCAGTCTCTTAGGTATCAAATATTTGGTTGCTGTGCGGCAGGAGATGCTTCCTGACTTGCTTGGACGTGTTCTTCCTGCATGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCCGCTGCAGATGCAATAGTTGCTTTGCAGGGTGAAACGCTGCACTCAATTGTGATGCTACTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCAACTAGCAGTGTAATGAATCTACTGGCTGAAATCTATTCTCAGGAAGAGATGATCCCTATGATGTATAAAGCATTTAAGTCTAGGGACACAGAAGTGGTAGATCTAAATGGAGTTGGTCATGATGGTGATGGTGGAGAAGAAAATCCTTATATGCTTTCAACCTTGGCCCCACGCTTGTGGCCCTTTATGAGGCATAGTATAACATCCGTCCGATATTCTGCTATACGCACTTTGGAAAGGCTACTCGAAGCAGGATATAAGAGAAGCATGTCCGAGCCATCTGGTGCTTCAATTTGGCCTTCTTTTATACTGGGAGATACACTTCGAATTGTCTTTCAGAATCTACTATTGGAACCAAATGAGAATATTTTGCAATGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGCCTGGTGGAGGACTTAGAGACAGCTGCAAGGTCTTACATGACATCTTGGATAGAACTTGCATTTACACCTTTTGGTTCTTCATTAGATGCCTCAAAGATGTTTTGGCCTGCCGCTTTTCCACGAAAAAGCCAATTTAGAGCAGCAGCTAAAATGAGAGCTGTGAAGGTTGAACATGAATTTGGTGGGGATGTACATCTGGATTCTATGAAAGGAAATATTCCACCAGAAAGAAATGGAGATGCTGCTATGAATTCAGTTAAGATAGTTATTGGTGCTGATGTGGACACATCAGTTACTAATACTCGAGTGGTTACAGCAACTGCGTTGGGAATTTTTGCTTCTAGGCTTCCAGAGAgttctataaaatatttgattgatcCACTGTGGAATGCACTTACCTCCCTGTCTGGGGTCCAGCGTCAGGTTGCATCGTTGGTGCTTATTTCTTGGTTCAAAGAGATTAAAAGCAGGCATCTACCTGAAAATCTTAATAGTATTCCTGGTGTTCCCAATTATCTAAAAGATTGGTTGCTTGACTTATTGGCATGTTCTGACCCATCATTCCCAACAAAAGATTCACTTCTTCCTTACATTGAGCTTTCAAGAACATATTCAAAGATGCGTGGCGAGGCTGCACAATTGGTAAATGCTATCAAGTCTTCTGGAATGTTTGATCAGTTATTGCCAACTGTAAAAACTGAATCAGAGAGCTTAAGTGTGGATGATGCCATTAGTTTTGCATCAAAAATTCCTGCATTGGGTAATGACAGTGCTGGGAATGAATCCTTGGGAAGGAACATTATTGATGATATCGAGTCATCAAAGCAAAGGCTCTTAGCAACTTCACGCTACTTGAAATGTGTACAGAGTAATTTGCATGTTACAGTTTCATCTGCAGTTGGTGCTGCAGTTGTCTGGATGTCTGAGTTGCCGTCAAGACTAACACCAATCATTTTGCCTTTGATGGCATCAATCAAACGAGAACAAGAGGAAATACTGCAAACAAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATGATTGTGTTGCACGAAGGCCTTGCcctaatgataaattaatcaagaatATTTGTGGTTTGACTTGTATGGATCCATCTGAGACACCTCAAGCTAAATATATTAGCTCCATGGAGAGCATTGAGGAGCAAGGTCTTCTGTCCTTTGGAACTTCTGTGGGTAAACAGAAGTCAAAGGTCCATGTGCTGGCTGGTGATGATCGATCCAAGGTGGAGGGCTTTATTAGTAGACGAGGAGCTGAACTGTCGTTGAGGCTTCTATGTGAGAAGTTCGGTTCTTCATTATTCGATAAGCTTCCTAAGTTATGGGATTGCCTTACTGAGGTGCTGAAGCCAATCTCTTCAGAATCATCGCCTGCCATTGACGAAAAACAAGTCTTCATGGCTATAGGTTCTGGTTGTGATCCCCAGATTTTGATCAACAATATCCAGGTGGTACGATCAATTGCTCCTGTATTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATATTTAGATGTATCAAGCATTCTCACGTAGCAGTTAGATTAGCTGCTTCACGCTGTATCACTTCAATGGCCAGGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTAGAGAATGCCATCCCTATGTTGGCAGATGCATCATCAGTTCATGCTCGGCAAGGTGCTGGAATGCTCATTAGTTTTCTTGTTCAGGGACTGGGTGTAGAGTTGGTCCCATATGCTCCTCTGTTGGTTGTCCCACTTCTAAGGTGTATGAGCGATTGTGATCAATCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTAGCACGAGGACTTCCTCCACCTGTTGGATTAGGTGAAGGTTTATCAAGAAATGCAGAAGACATAAAATTCTTGGAGCAACTGCTTGATAACTCTCATATTGATGATTACAAGTTATGCACTGAGCTAAAAGTGACATTGAGAAGGTATCAGCAAGAAGGTATAAATTGGTTGGCTTTCATGAAACGTTTCAAGCTTCATGGAATTTTATGCGATGACATGGGTCTTGGTAAGACACTTCAGGCATCAGCAATTGTGGCATCTGATATTGTTGAGTGTCGAACTTCAAATGGGAATGGTGACCTTCTATCATCTTTAATTGTTTGTCCATCAACGCTTGTTGGGCATTGGGCCTTTGAGATAGAGAAGTATATTGATATTTCTGTTATATCTACACTTCAATATGTTGGTTCTGCTCAGGAGCGGATGTGTCTTAGAGATCACTTTAGCAAGCATAATGTGATCATAACATCATATGATGTTGTTCGCAAAGATATTGATTATTTGGGACAACTTCTTTGGAATTACTGTATTTTGGATGAAGGGCATATAATCAAAAATGCTAAATCTAAAGTTACAGTTGCTATAAAGCAGTTAAAAGCCCAGCACCGCTTAATATTGAGTGGAACTCCAATACAGAATAACATCATGGACTTGTGGTCactttttgattttctaatGCCAGGGTTTCTTGGTACAGAGAGACAGTTCCAAGCTGCATATGGAAAACCACTCCTAGCTGCAAAAGATCCAAAGTGCTCGGCTAAGGATGCTGAAGCTGGAGCACTTGCCATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGTCGAACAAAGGATGAAGTATTGTCTGATCTGCCCGAGAAAATAATTCAGGACAGATACTGTGATCTGAGTCCTGTACAATTTAACCTCTATGAACAGTTTTCTGGATCTCATGCAAAACAAGAAATCTCCTCTTTAGTTACAAAGAATGAGTCTCCTGCAACAGAAGGAAGTAGCAGTTCGCCTAGAACATCTTCACATGTTTTCCAGGCTCTCCAGTACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTCCTTGGAGAGAAAATTCCAGATTCACTCTCTGGTGTTCTCTCAGAATTGTTGCCTGCCGGCTCTGACATATTTTCAGAGCTTCACAAACTGCATCACTCTCCCAAGTTGGTTGCTTTACAGGAGATTTTGGAGGAGTGTGGAATCGGGGTTGATGCATCAGGTTCTGAGGAGGATGTTAGCATTGGCCAGCACAGGGTCTTGATATTTGCTCAACACAAGGCTTTTCTGGATATAATTGAAAGAGATTTGTTCCAGACATACATGAAGAATGTGACATATTTGCGGCTGGATGGATCTGTTGAGCCAGAAAAGCGTTTTGAAATTGTCAAAGCTTTCAATTCAGACCCTACGATTGATGTCTTGCTGCTTACAACACATGTGGGTGGCCTTGGGTTGAACCTAACATCTGCAGATACCCTCGTTTTTGTGGAGCATGATTGGAATCCAATGCGAGATCATCAGGCTATGGACAGAGCACACAGGTTAGGTCAGAAAAGAGTCGTTAATGTCCATCGTCTAATAATGCGTGGTActttagaagaaaaagttatGAGCCTTCAAAAGTTCAAAGTTTCGGTGGCTAATGCTGTCATCAATGCCGAAAATGCTAGTATGACAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGAAGGGAGCCTCTGTTGCAAAGCGATCTGAGAACTCTGATGAAGACACTAAATTGGTAGGCAGTGGAAAGGGGTTAAAAGCTATTCTGGGGGGATTGGAAGAGCTATGGGACCAATCACAATATACAGAAGAATAcaatttgaatcaatttttggCAAAGCTAAATGGCta 6158 0.4063 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPHDLNGLLKKVSQFLRSKNWDTRVAAAHAIGAIAENVKHSSLAELFSSVELQMSEAGMSGSHEDLLAWPYFGSNITGNSFRSFDINKVLEFGALLASGGQEYDIGSDNAKNPKERLARQKQNLRRRLGLDVCEQFMDINEMIRDEDLMSHRSDSRLNGIDQRVFTSHSVHNIQKMVANMVPVKSKWPSARELNLLKRKAKTNSKDQTKSWCEDGITEASFAPNMTSKGACPDSVSRDTTFSDGSHDEDGFEQDGNGGWPFHTFVEQLILDMFDPVWEIRHGSVMALREILTHQGGSAGVFKPDSRLNRTLFVESADKSISNALKREREIDLNMQVSVDEFNSNFKRPKFEDVSSCTSLDSTITCSNSNDVEISISANAYGSNLPLDCGNGQYNGILVDMEMESCREGLHYSSKEATTIEEQKRFSDDNKVSYGNLDVLRNLPQNSELMNLVKVARNSWLQNLQFLQDCVIRILCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALINETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLPDLLGRVLPACKSGLEDPDDDVRAVAADALIPAADAIVALQGETLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPMMYKAFKSRDTEVVDLNGVGHDGDGGEENPYMLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSEPSGASIWPSFILGDTLRIVFQNLLLEPNENILQCSERVWRLLVQCLVEDLETAARSYMTSWIELAFTPFGSSLDASKMFWPAAFPRKSQFRAAAKMRAVKVEHEFGGDVHLDSMKGNIPPERNGDAAMNSVKIVIGADVDTSVTNTRVVTATALGIFASRLPESSIKYLIDPLWNALTSLSGVQRQVASLVLISWFKEIKSRHLPENLNSIPGVPNYLKDWLLDLLACSDPSFPTKDSLLPYIELSRTYSKMRGEAAQLVNAIKSSGMFDQLLPTVKTESESLSVDDAISFASKIPALGNDSAGNESLGRNIIDDIESSKQRLLATSRYLKCVQSNLHVTVSSAVGAAVVWMSELPSRLTPIILPLMASIKREQEEILQTKSAEALAELMYDCVARRPCPNDKLIKNICGLTCMDPSETPQAKYISSMESIEEQGLLSFGTSVGKQKSKVHVLAGDDRSKVEGFISRRGAELSLRLLCEKFGSSLFDKLPKLWDCLTEVLKPISSESSPAIDEKQVFMAIGSGCDPQILINNIQVVRSIAPVLNEELKPKLLTLLPCIFRCIKHSHVAVRLAASRCITSMARSMTVKVMGAVVENAIPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPPPVGLGEGLSRNAEDIKFLEQLLDNSHIDDYKLCTELKVTLRRYQQEGINWLAFMKRFKLHGILCDDMGLGKTLQASAIVASDIVECRTSNGNGDLLSSLIVCPSTLVGHWAFEIEKYIDISVISTLQYVGSAQERMCLRDHFSKHNVIITSYDVVRKDIDYLGQLLWNYCILDEGHIIKNAKSKVTVAIKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAAKDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQFNLYEQFSGSHAKQEISSLVTKNESPATEGSSSSPRTSSHVFQALQYLLKLCSHPLLVLGEKIPDSLSGVLSELLPAGSDIFSELHKLHHSPKLVALQEILEECGIGVDASGSEEDVSIGQHRVLIFAQHKAFLDIIERDLFQTYMKNVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASMTTMNTDQLLDLFASAETSKKGASVAKRSENSDEDTKLVGSGKGLKAILGGLEELWDQSQYTEEYNLNQFLAKLNG 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01931 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1690 1991 IPR027417 -
Bva09g01931 2052 Gene3D - 503 688 IPR011989 -
Bva09g01931 2052 Gene3D - 4 86 IPR011989 -
Bva09g01931 2052 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 1985 IPR044972 GO:0003677|GO:0016887|GO:0017025
Bva09g01931 2052 SMART ultradead3 1453 1649 IPR014001 -
Bva09g01931 2052 Pfam SNF2-related domain 1475 1771 IPR000330 GO:0005524|GO:0140658
Bva09g01931 2052 MobiDBLite consensus disorder prediction 261 293 - -
Bva09g01931 2052 Gene3D - 1210 1413 IPR011989 -
Bva09g01931 2052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1443 1689 IPR027417 -
Bva09g01931 2052 SMART helicmild6 1849 1935 IPR001650 -
Bva09g01931 2052 MobiDBLite consensus disorder prediction 261 276 - -
Bva09g01931 2052 Pfam Helicase conserved C-terminal domain 1835 1935 IPR001650 -
Bva09g01931 2052 MobiDBLite consensus disorder prediction 1732 1751 - -
Bva09g01931 2052 SUPERFAMILY ARM repeat 6 1496 IPR016024 -
Bva09g01931 2052 Pfam Domain of unknown function (DUF3535) 783 1240 IPR022707 -
Bva09g01931 2052 CDD SF2_C_SNF 1804 1946 - -
Bva09g01931 2052 Gene3D - 1699 2016 IPR027417 -
Bva09g01931 2052 Gene3D - 1429 1688 IPR038718 -
Bva09g01931 2052 CDD DEXHc_Mot1 1457 1689 IPR044078 GO:0005524
Bva09g01931 2052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1826 1983 IPR001650 -
Bva09g01931 2052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1469 1639 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01931 Bva-Chr9 15308185 15334268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01931 1452 1990 RAD5 or RAD16-like Gene Family AT1G02670 26.117 1.77e-40 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva09g01931 DUF3535 2.2e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01931 K15192 - gmx:100777977 3264.55