Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01895 ATGGAGAGTAAAGCAAATTCTACTACAACATGCCCTGAAGAATTCTTGTGCCCTATATCATTGGAGATCATGGAGGATCCCGTGGTCACTGCCACGGGCATTACATGTGAAcgaaaaagaattgaagaatgGTTCTTtgttaagaacaaaaagaCTTGTCCTGCAACTAGTCAAGAACTGAAGAATTTTGATCTCACTCCAAATCACCTTTTGAAGAGAATCATCTCGTCATGGCGAAACAAAATGAGTTTGGAACAAGAAGGGGAAGAGAAAATGCCTCAACCCAATGTTCGAGTACCAAGGCGCTACGAAGTAACCCATGCCACACTCCTAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACTTGTACCCGAAACTAACATAGGTGGGTA 395 0.4 MESKANSTTTCPEEFLCPISLEIMEDPVVTATGITCERKRIEEWFFVKNKKTCPATSQELKNFDLTPNHLLKRIISSWRNKMSLEQEGEEKMPQPNVRVPRRYEVTHATLLGKARTTFNKRVLVPETNIGG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01895 131 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Bva09g01895 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 97 IPR013083 -
Bva09g01895 131 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 94 - -
Bva09g01895 131 SUPERFAMILY RING/U-box 8 84 - -
Bva09g01895 131 PANTHER WDSAM1 PROTEIN 11 94 IPR045185 GO:0061630
Bva09g01895 131 CDD RING-Ubox_PUB 15 58 IPR045210 -
Bva09g01895 131 SMART Ubox_2 14 78 IPR003613 GO:0004842|GO:0016567
Bva09g01895 131 ProSiteProfiles U-box domain profile. 10 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01895 Bva-Chr9 14701136 14702053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01895 12 95 U-box Gene Family AT2G35930 51.190 1.00e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01895 - - gra:105784307 111.694