Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01890 ATGTCTCAAGACAGTTCTGAATCGTCTAGTTGTTGCGCGAGATCAGATCATCCTGATGTAGCTTCAGCTGAACTGAAGCTGTACCGAGCTTTCATCTTCTCTGTACCTATCTTCTTCACTttcattcttctatttttgttcTATGTGTTCTATCTTCGGCCACGGAGGGTGGATTGGGCGTCACTCAGAATGAGAGCATTTACAGAGGACAATAATGACATCTCTAGGCCTTCTGAATCGGGCTTGAGCAAAGAACTCAGAGAGATGCTGCCAGTGATTATATACAAGGAAAGCTTCTATGTTAAAGATACACAATGTTCAGTATGCCTTTTGGACTACCAACAAGAAGATAGGCTTCAACAGATACCTGCATGCAGCCATACGTTTCACATGAACTGCATTGATCTTTGGCTTGCCAACCACAGAACTTGCCCTCTCTGCCGCTTGTCTCTATCTGCTAAATCTTCAGAGATGCCTAATATACAGGAGATAGATCATGATACTAATAATGAAGAAACGTCAAACGTTCAATCCTCTGAATTAAGACCGACAAGGCATCCAGATGTCGGAGTTCATCAGAATTGGTCCGGTGAAGCTGAATGCAGTGCAAACTGCAGTGATCTTGAAAGAGGAAATACAAGGGAACAATTACAAGAAGCTTG 662 0.4184 MSQDSSESSSCCARSDHPDVASAELKLYRAFIFSVPIFFTFILLFLFYVFYLRPRRVDWASLRMRAFTEDNNDISRPSESGLSKELREMLPVIIYKESFYVKDTQCSVCLLDYQQEDRLQQIPACSHTFHMNCIDLWLANHRTCPLCRLSLSAKSSEMPNIQEIDHDTNNEETSNVQSSELRPTRHPDVGVHQNWSGEAECSANCSDLERGNTREQLQEA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01890 220 MobiDBLite consensus disorder prediction 159 195 - -
Bva09g01890 220 SUPERFAMILY RING/U-box 90 158 - -
Bva09g01890 220 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 7 203 - -
Bva09g01890 220 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Bva09g01890 220 SMART ring_2 106 147 IPR001841 -
Bva09g01890 220 Pfam Ring finger domain 105 148 IPR001841 -
Bva09g01890 220 CDD RING-H2_PA-TM-RING 105 148 - -
Bva09g01890 220 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 203 - -
Bva09g01890 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01890 Bva-Chr9 14548949 14555325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01890 22 216 C3H Transcription Factor Family AT4G10150 52.000 1.25e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01890 K19039 - pvy:116110062 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01890 09 14548949 14555325 Bva09g01890 09 14548949 14555325 ECH