Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01879 atgactCCGGCTAATTTGGCTTCACAGTTTGGTGACACCACATACACCAAAGTGTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAAAGAGACCATGAAGAAGTATTTTGAACAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACAGGAAGATCTAAAGGCTATGGATTTGTAACTTTTCGTGAACCCGAAGCAGCCATGAGAGCTTGTGTTGATGCTGCTCCTGTAATAGATGGCAGGAGGGCGAATTGTAACCTTGCTTGTTTGGGTGTTCAGAGATCTAAGCCTTCAACCCCAAAGCATggAGGAGCAGGGAGGAACTTTAGGGTAATGGGTTCTTTCCAGACAGGGTTTGGAGGAGGAATGGGTTCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTGTGCTATCCAGCAAGGGATACCTTACAATGTTTATggGTACTCTCCATACTCGCCGGACTATACTTACCCTACGAGCTACTATAGCGTGTATGGAGCAGGAGCAACAGCTCAGTACCCACTGTATGGAACCGGACCAGCAGGGATGATTGCTGGGGCTGCAGCAGCCGCCGCATTTTACCCATATCTACAGTTCGGAGAAGGGAGCGGCGCCACCACCGGCGGATATACTTCTGGGCAGGGTTACGGTGTCAACTACCCGCCGCAGATGTTTCAGTATTCTCCCATTAGCTCCACTGCAGGGTATGCACAGCACTATGGTGCTCCCATGTCCCTTGCACCTTCGCCTGCCTTGCAATCAGGCGTGACAATGGCTCTTCAAGCTCCAATTCCACATCGCTA 815 0.4969 MTPANLASQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGMGSAFPSAATFPHCAIQQGIPYNVYGYSPYSPDYTYPTSYYSVYGAGATAQYPLYGTGPAGMIAGAAAAAAFYPYLQFGEGSGATTGGYTSGQGYGVNYPPQMFQYSPISSTAGYAQHYGAPMSLAPSPALQSGVTMALQAPIPHR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01879 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Bva09g01879 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Bva09g01879 271 PANTHER BOULE-RELATED 1 266 IPR037366 GO:0003729
Bva09g01879 271 SMART rrm1_1 17 89 IPR000504 GO:0003723
Bva09g01879 271 PANTHER OS01G0876800 PROTEIN 1 266 - -
Bva09g01879 271 Gene3D - 3 112 IPR012677 -
Bva09g01879 271 CDD RRM_RBM24_RBM38_like 16 91 - -
Bva09g01879 271 SUPERFAMILY RNA-binding domain, RBD 11 111 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01879 Bva-Chr9 13833288 13840078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01879 1 91 C2H2 Transcription Factor Family AT2G19380 40.659 3.37e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01879 - - adu:107477578 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01879 09 13833288 13840078 Bva09g01879 09 13833288 13840078 ECH