Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01870 ATGGTTGTGAACGAGAGGCCATCGAAGAGGATGAAGAGAAGGGTCAGCGCCGATCTCTACgattttcttacttttccGGCGGCTGGAGACTCCTGCTGCGATGGAGGTGGCGAGCCTTTCCGGAAGGCTGTTCAGCGGTTTCTGTCTAATCACGCGCGGCTCACTTTCCCGCCTTCAGTGTTCCCTTCCCTGATGACGTGGCAGATCATGTTCCGGATTGGAGGCCTCGTAGATGGGCCGGATCTGTCGCCGGCGATGGTCACTCTCGACATTGTTGAGGAGGACGTGACTAGATCTAGAAGTTCAGTCTACTGTGATCAGTGCCGAGTCGTTGGCTGGAGTGGGCATCCGGTGTGCCGAAAGCGATACCATTTCATAATAAGGGCTGCTGCAAGCAATCCCATTGATTCATATCAAAGACCCTGTTCAAGATGTGGAAATGTCCTCCAATTATCAGAACAAAGGTGCAAGTGGTGCAGCTATTTGATTACCGTGGATGATCTTGAAGACTGGGTGTATCTTCAAATTGAAGGCAATACTCATCTTCTGCATGGTGTTGTTCATTCTAATGGTTATGGCCATTTGCTTACTCTCAATGGAAGAGAAGGTGGCTCCAAGCTTCTTTCTGGGTCTGACATTATGGGTTTTTGGGATAGGCTTTGTGGTGCACTTTCCGTTAGGAAGGTTAGTGTAATGGATTTGTCGAAGAAATATGGGCTCGAATATCGGGTGCTTAATGCAATTACCAGTGGTTGTTCTTGGTATGGCAATTGGGGTTATGAATTTGGCACTGGCAGTTATGCTCTAACTCAAGATGCTTACCAGGAAGCAGTGAATACCTTGTCTAACATGCCATTGTCCTCTTTCCTATTCCAAGGACGAGGTCCGCGGAATCGCCTGCAGTCTGTTATTTCCCTTTACCAATCTTTGGCTGAAACCGAACTTTTAACCATCAAAgatctcttctcctttctgtTAAACGTGATTCATGAATTCCACAAGCCCTTGACCACAAGTGCAGCAAAACATCATGAATCCTTGAGCACTTGCAATATACTATGTGCTTGGACGAGGGATGATGTTGAAGGTGTACAACAATCTTTGATGAAGGTACtggctgctgctgctgctgctgctagTGATGGCAAATGGGTGACAAGGCGTGCTCTCAAAGGTGCTTTGAGTAGAGGGATTGCATCTCCGGAGCTTCTAGATTACAGTCTTAAACACCTAGGGGGAAAATTGACTTCCAATGGCATGGTTGTTCGATCAAAATGTAATCCTGTTACTAGTGCTGTTGAGTTCAGGCTTGAACCTTTGGGTATCGTGAAAAATGGATTTAATGCAAATTCAAGTTATCCATCAGAAGAGCAAGTGATATCTGATCTGAGGTTCTTATGTGATTCAATTGTTCATCCTGACAAGATGGCGAACTACAGACCTCGGATTATGAGGAAACGGGTGGCGGATTCAGCGAGGAAGCTTCTTGATTGCAAGCAATTCATGAAGGTTTACGGACCGCACAAAATGGTAGAAGAATTGCCTGCAGCCATTAGGCTATGGTGTTATGTAGAGCTTTCAGATCAGCCCAAAGATGACCCTTCCCCTCCACCAGAACTCGTTGTCTTGCCTTTGAATGCTACCGTTGCCGACCTCAAGCGTGAAGCAACTAATGCCTTTCAAGATGTATATGCCATGTATAAGAGGTTTCAAGTTGAGGAACTCCTTGAATATGGGTCTGTCAGTGATTCCATCACTGTAAAATTGTTGCTTGGAACAGGTGGGTCAGTCAAAATCCAAGGTAAATGCTCTTCAAAACATGGGCTTAATCGATTCCGAATGGAAAGAGGAACAGAGACATGGAAAGTTGATTGCCTCTGTGGTGCCAAGGATGATGATGGGGAAAGAATGTTGGCATGTGATACATGTGGTGTATGGCAGCACGCTAGATGTGCTGGAATTGATGACGCTGATGCCATTCCTTCAAAGTTTCTGTGCATGCGATGTGTTAACTCCTATCGCGAGGAAGCAAGAAAGGTGCCAGATTCAAATGGGGAGACAAACAAGGCTTGTAAACCCAGCACATCTTGCAGAGGGGAAGCTGTGGCAGCAGGAAATCCAGCAATGGCTTGTAATATGGCTGTGAATTTTGGTGTACGTTG 2162 0.4477 MVVNERPSKRMKRRVSADLYDFLTFPAAGDSCCDGGGEPFRKAVQRFLSNHARLTFPPSVFPSLMTWQIMFRIGGLVDGPDLSPAMVTLDIVEEDVTRSRSSVYCDQCRVVGWSGHPVCRKRYHFIIRAAASNPIDSYQRPCSRCGNVLQLSEQRCKWCSYLITVDDLEDWVYLQIEGNTHLLHGVVHSNGYGHLLTLNGREGGSKLLSGSDIMGFWDRLCGALSVRKVSVMDLSKKYGLEYRVLNAITSGCSWYGNWGYEFGTGSYALTQDAYQEAVNTLSNMPLSSFLFQGRGPRNRLQSVISLYQSLAETELLTIKDLFSFLLNVIHEFHKPLTTSAAKHHESLSTCNILCAWTRDDVEGVQQSLMKVLAAAAAAASDGKWVTRRALKGALSRGIASPELLDYSLKHLGGKLTSNGMVVRSKCNPVTSAVEFRLEPLGIVKNGFNANSSYPSEEQVISDLRFLCDSIVHPDKMANYRPRIMRKRVADSARKLLDCKQFMKVYGPHKMVEELPAAIRLWCYVELSDQPKDDPSPPPELVVLPLNATVADLKREATNAFQDVYAMYKRFQVEELLEYGSVSDSITVKLLLGTGGSVKIQGKCSSKHGLNRFRMERGTETWKVDCLCGAKDDDGERMLACDTCGVWQHARCAGIDDADAIPSKFLCMRCVNSYREEARKVPDSNGETNKACKPSTSCRGEAVAAGNPAMACNMAVNFGVR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01870 720 Pfam PHD-finger 625 671 IPR019787 -
Bva09g01870 720 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 693 - -
Bva09g01870 720 CDD PHD_MMD1_like 624 669 - -
Bva09g01870 720 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
Bva09g01870 720 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 693 - -
Bva09g01870 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 676 IPR013083 -
Bva09g01870 720 SUPERFAMILY FYVE/PHD zinc finger 615 672 IPR011011 -
Bva09g01870 720 SMART PHD_3 624 670 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01870 Bva-Chr9 13536121 13539573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01870 83 669 PHD Transcription Factor Family AT5G22260 28.019 1.04e-78 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva09g01870 PHD 1.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01870 - - gmx:100780558 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01870 09 13536121 13539573 Bva09g01870 09 13536121 13539573 ECH