Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01847 ATGATGGCTTCAGCTCTTGATGTGTGGCTTGGTTGTGTGGTTGTAGATCCTGGGCAGCAGCTCTAAGTTTGCCAGATTTATGAGATTCAGAGAGCTCAAAGAGAAGCAGAGATTCGACATCAACCGTCTGATCAGAGTGATCAGACTTTGAATATTCAGATAGACGACAGAGTTCAACTTCAGCCTCTAAGGGCTGAGAGGAGAGAGCATAGTGAAAGGTCACCGCAGTTCATGAATATTTCATTTGCTGCTAGGGTTATTGCCTCTTTGCTTGTCTTGCCGCCAACAAAAAGCTTTGAAACCACAGAAAGCAGCAGTGGTCAAACGGCAGGATCCAAGGATGAGTGTGCAATTTGCTTGGAAGATTTCAAGAATGGTGAGTCGGTCCAAGCTTTCCCCAAGTGCAACCATGTATTTCATCCCACTTGTATTAACACTTGGTTGCTAGCGGGAAAATTTACTTGCCCTTATTGTCGTTTCACTCTGCAGGAGTTAGGTGTTTG 503 0.4493 MMASALDVWLGCVVVDPGQQLVCQIYEIQRAQREAEIRHQPSDQSDQTLNIQIDDRVQLQPLRAERREHSERSPQFMNISFAARVIASLLVLPPTKSFETTESSSGQTAGSKDECAICLEDFKNGESVQAFPKCNHVFHPTCINTWLLAGKFTCPYCRFTLQELGV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01847 166 CDD RING-H2 115 158 - -
Bva09g01847 166 Pfam Ring finger domain 113 158 IPR001841 -
Bva09g01847 166 ProSiteProfiles Zinc finger RING-type profile. 115 158 IPR001841 -
Bva09g01847 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 164 IPR013083 -
Bva09g01847 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 65 161 - -
Bva09g01847 166 SMART ring_2 115 157 IPR001841 -
Bva09g01847 166 PANTHER OS06G0666500 PROTEIN 65 161 - -
Bva09g01847 166 SUPERFAMILY RING/U-box 114 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01847 Bva-Chr9 13127515 13129715 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01847 94 161 C3H Transcription Factor Family AT2G17450 45.714 1.10e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01847 - K10664 aprc:113865236 93.2041