Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01829 ATGGCAAGAAACATGAACGTCAAAGGCTGCAGAAagattgaaatgaagaaaataagcaaAGAAAGCAACTTACATGTGACCTTCTCCAAGCGTCGGAACGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACTCTTTGTGGTGCTCAAGTTGCTCTAATCATCTTCTCTCCAGGACAAAAAGTCTTCTCGTTCGGCCATCCTACTGTTGATTTTGTGCTTAATCGCTTTTTGACTAGAGCGCTGCCACAGAACTTTAGTTCTATGCAATTCATTGAGGCTAATCTCAGTGCCAACCTCTGTAATCTCAACACAGAGCTAACTGAGCTCTCAGAGCTTGAAGATGCTGAGAAGACACGTAGTGTGATGCTGAACACACTGAGAAAGCCTACACTTGAAAAGTGTTGGTGGGCAGGTCCTATGGAAGCGATGAACTTGCCTCAGCTTGAACTGTTAAAGGCTTCATTAGAAGAGCTGAAAAGCACTTACAATTTGAAAGCTGATGGTACTCAGTTTCACTTTCAGGGATCTAACCCAGGTCAGTTTTTGGCTGGTAGTTCTTCTAGATCAATTACTTTGCCACAGCAAGCACCACCACAGTTGAGTCAACCTCCAATTTCGCTGGCGAATCAAATTTTTGATGGGAACAGCTTGATGGCACCGCTACCAACTGGCCAAGGACTTGACAACATAAGAGGATTTGAtcctatattttattg 716 0.4218 MARNMNVKGCRKIEMKKISKESNLHVTFSKRRNGLFKKASELCTLCGAQVALIIFSPGQKVFSFGHPTVDFVLNRFLTRALPQNFSSMQFIEANLSANLCNLNTELTELSELEDAEKTRSVMLNTLRKPTLEKCWWAGPMEAMNLPQLELLKASLEELKSTYNLKADGTQFHFQGSNPGQFLAGSSSRSITLPQQAPPQLSQPPISLANQIFDGNSLMAPLPTGQGLDNIRGFDPIFY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01829 238 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Bva09g01829 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 205 - -
Bva09g01829 238 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Bva09g01829 238 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva09g01829 238 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva09g01829 238 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva09g01829 238 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva09g01829 238 PANTHER MADS BOX PROTEIN 11 205 - -
Bva09g01829 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bva09g01829 238 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
Bva09g01829 238 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01829 Bva-Chr9 12838406 12839122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01829 8 187 Type I MADS-box Gene Family AT5G60440 50.000 2.67e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01829 SRF-TF 8.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01829 - - cit:102622898 188.348