Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01821 atGGCAAGACTCCGGAACAACAATGGCCatagaaagatcaaaatcaaGAAGATGAGCAAGGACAACAATTTGCAAGTGACTTTCTCCAACGGTCAAAATGGCCTTTGCAAGAAAGCCAGTGAGCTCTGTACTCTTTTAGTTGTTGAGGCTGCTCTCATCATCTTCTCTCCTGGAAAAAATGTGTTCTCTTTTGGTCATCCTAGTGTTGATTATGTGATAAATAGTTGTTTACCTGGAGCGTTGCCATA 248 0.3952 MARLRNNNGHRKIKIKKMSKDNNLQVTFSNGQNGLCKKASELCTLLVVEAALIIFSPGKNVFSFGHPSVDYVINSCLPGALP 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01821 82 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 9 76 - -
Bva09g01821 82 PANTHER MADS BOX PROTEIN 9 76 - -
Bva09g01821 82 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Bva09g01821 82 Gene3D - 20 79 IPR036879 GO:0003677|GO:0046983
Bva09g01821 82 SUPERFAMILY SRF-like 9 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01821 Bva-Chr9 12696822 12697070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01821 4 77 Type I MADS-box Gene Family AT5G60440 54.054 1.31e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01821 SRF-TF 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01821 - - gmx:100780986 96.2857