Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01817 atGGGGAGACTCCGGAACCCCAATGGCCatagaaagatcaaaatcaaGAAGAGGAGCAAGGACAACAATTTGCAAGTGACTTTCTCCAACGGTCAAAATGGCCTTTCCAAGAAAGCCAGTGAGCTCTTTACTCTTTTTGCTGTTGAGGCTGCTCTCATCATCTTCTCTCCTGGAAACAAGGTGTTCCCTTTTGGTCATCCTAGTGTTGATTATGTGATTAATAGTTGTTTACCTGGAGCGTTGCCACAGACCTCTAGTTTCATGCGAGTTATTAAGAGTAATCTCACTAAGAAAAAGTA 299 0.4114 MGRLRNPNGHRKIKIKKRSKDNNLQVTFSNGQNGLSKKASELFTLFAVEAALIIFSPGNKVFPFGHPSVDYVINSCLPGALPQTSSFMRVIKSNLTKKK 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01817 99 Gene3D - 20 97 IPR036879 GO:0003677|GO:0046983
Bva09g01817 99 PANTHER MADS BOX PROTEIN 7 75 - -
Bva09g01817 99 SUPERFAMILY SRF-like 9 75 IPR036879 GO:0003677|GO:0046983
Bva09g01817 99 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 7 75 - -
Bva09g01817 99 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva09g01817 99 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 64 IPR002100 GO:0003677|GO:0046983
Bva09g01817 99 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva09g01817 99 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva09g01817 99 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva09g01817 99 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01817 Bva-Chr9 12618738 12619037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01817 4 73 Type I MADS-box Gene Family AT4G36590 57.143 4.15e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01817 SRF-TF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01817 - - gmx:100794751 92.8189