Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01816 atGAAGATGAGCGAGAAGAGCAATTTACAGGTGACTTTCTCCAAGCGTCAAAATGGACTTTTCAAGAAAGCCAATGAGCTTCGCTCTCTTTCTGCTGCTGAGGTTGCTCTTATAATCTTCTCTCCTAGAAATAAGGTCTTCTCTTTTGGCCACCCCAGTGTTAATCATCTAGTTAATCGCTTTTTGACGAAAGCGGTGCCACAGGCCTCTGGTTCCATGTA 221 0.4389 MKMSEKSNLQVTFSKRQNGLFKKANELRSLSAAEVALIIFSPRNKVFSFGHPSVNHLVNRFLTKAVPQASGSM 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01816 73 SMART madsneu2 2 52 IPR002100 GO:0003677|GO:0046983
Bva09g01816 73 PRINTS MADS domain signature 30 51 IPR002100 GO:0003677|GO:0046983
Bva09g01816 73 PRINTS MADS domain signature 15 30 IPR002100 GO:0003677|GO:0046983
Bva09g01816 73 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 2 65 - -
Bva09g01816 73 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 49 IPR002100 GO:0003677|GO:0046983
Bva09g01816 73 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bva09g01816 73 Gene3D - 5 72 IPR036879 GO:0003677|GO:0046983
Bva09g01816 73 PANTHER MADS BOX PROTEIN 2 65 - -
Bva09g01816 73 SUPERFAMILY SRF-like 3 64 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01816 Bva-Chr9 12609566 12609787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01816 2 61 Type I MADS-box Gene Family AT4G36590 70.000 2.94e-23 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01816 SRF-TF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01816 - - peu:105109466 99.3673