Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01811 ATGTTCTCTGAGGAAGTAATATCCTGCATAACTCGAACCTTTCAAGAAGCCAATGTCCATGTTTCTTATCTAGCTGCAATTCACCAGTCACCAGATGATAACCAAATTGTCCAAGAGCTTCACAAATTAACAACTTTGACGACAAGAGTCTTCATTGTGCGCATGTCTCCCATGTTTGGTTTCCGTCTCTTTGCCATGGTAAAAGATATTGGAATGATGAGTGAAGGCTATGTTTGGATCCTCACCAGTGAAATGACTAACCAGTTGGCCTCCTTAAATTCTTCAATCACTGATACGATGCAGGGTGTTCTAGGTTTAGGTGCATATTTTCCTAAAACAAAGGAGTTTCAACATTTTCGGGCAGGTtggaaatcaaaatttcaacaagaaaatCCCACCACTCTAGGACGTGAATTGAATGTTTACTGCCTTTGGGCTTATGATGTTGTAACAGCCGTTGCCATGGCAGTTCAGAAGGCTGGGGTCAAAGAATTTGTTGCTTTCAAAATACAAATAATTAATGTGTTTGGTGATGGAAAAAAGGTAGTGGGATTTTGGACACCAGAAAGTGGACTGACAAGAAAAGTCAATTCAACAAAGACAGACATAGGCACAGGGCAGAGAATCCATAGCAACTTAGCAACGTTTGTGGTGATCATATGGGTTTTTGTGGGGCTGATATTGACCCAAAGTTATACAGCAGGCTTGACAACACTTTTGACAGTGGAACAGCTACGACCTGCCGTGACAGATATAAATCAGCTCATACAGAGTGGAGACTATATTGGACACCAACATGGTTCCTCTATTATTGAATTCTTAAGAAAAATGGGTTTTGATGAGACCAAGCTTCGTGTTGTTAGGTCTATTGGAGAAAGTGATCACCTTCTAACATTAGGAAGCAGAAATGGAGGTATTGCTGCCGCCTTTGCTGAAACCccatatataaaagttatgcAGTCAAGGTATTGCTCCAAATATACAACCATCGGACCAAGTTACCAGAGTCAAGGATTTGGCTTTGTAATACATTTGTA 1037 0.3934 MFSEEVISCITRTFQEANVHVSYLAAIHQSPDDNQIVQELHKLTTLTTRVFIVRMSPMFGFRLFAMVKDIGMMSEGYVWILTSEMTNQLASLNSSITDTMQGVLGLGAYFPKTKEFQHFRAGWKSKFQQENPTTLGRELNVYCLWAYDVVTAVAMAVQKAGVKEFVAFKIQIINVFGDGKKVVGFWTPESGLTRKVNSTKTDIGTGQRIHSNLATFVVIIWVFVGLILTQSYTAGLTTLLTVEQLRPAVTDINQLIQSGDYIGHQHGSSIIEFLRKMGFDETKLRVVRSIGESDHLLTLGSRNGGIAAAFAETPYIKVMQSRYCSKYTTIGPSYQSQGFGFVIHL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01811 345 Pfam Receptor family ligand binding region 6 180 IPR001828 -
Bva09g01811 345 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 3 165 - -
Bva09g01811 345 Gene3D - 2 127 - -
Bva09g01811 345 SUPERFAMILY Periplasmic binding protein-like II 228 343 - -
Bva09g01811 345 PANTHER GLUTAMATE RECEPTOR 2.9 206 341 - -
Bva09g01811 345 PANTHER GLUTAMATE RECEPTOR 2.9 3 165 - -
Bva09g01811 345 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 206 341 - -
Bva09g01811 345 Pfam Ligand-gated ion channel 204 259 IPR001320 GO:0015276|GO:0016020
Bva09g01811 345 Gene3D - 128 288 - -
Bva09g01811 345 SUPERFAMILY Periplasmic binding protein-like I 5 190 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01811 Bva-Chr9 12530347 12533602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01811 207 345 Ion Channels AT2G24720 40.288 8.34e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01811 K05387 - tcc:18587656 189.119