Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01808 ATGAAGATGAGCAAGAAAAGCAGTTTGCAAGTGACTTTCTCCAAGCGTCGAAATGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCTCTCTTTGTGCTGCTAAGGTTGCTCTCATAATCTTCTCTCCTAGAAATAAAGCCTTCTCTTTTGGCCATCCTAGTGTTAATCATCTAGTTAATCGCTTTTTGACTAAAGTGGTGCCACAGGCCTCTAGTTTCATGCGATTTATTGAGGCTGGTCATAATGCCAAGCTATGTAACCTCTTTGTAGAGCTAATAGAGCTCTCAGAGCTTGATGACATTGAGAAGAAGCATAGCGTGATGCTAAATTGTCCTAAGACATTCTG 344 0.4157 MKMSKKSSLQVTFSKRRNGLFKKASELCSLCAAKVALIIFSPRNKAFSFGHPSVNHLVNRFLTKVVPQASSFMRFIEAGHNAKLCNLFVELIELSELDDIEKKHSVMLNCPKTF 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01808 114 Gene3D - 5 73 IPR036879 GO:0003677|GO:0046983
Bva09g01808 114 SUPERFAMILY SRF-like 3 67 IPR036879 GO:0003677|GO:0046983
Bva09g01808 114 SMART madsneu2 2 52 IPR002100 GO:0003677|GO:0046983
Bva09g01808 114 PRINTS MADS domain signature 15 30 IPR002100 GO:0003677|GO:0046983
Bva09g01808 114 PRINTS MADS domain signature 30 51 IPR002100 GO:0003677|GO:0046983
Bva09g01808 114 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 49 IPR002100 GO:0003677|GO:0046983
Bva09g01808 114 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bva09g01808 114 PANTHER MADS BOX PROTEIN 2 108 - -
Bva09g01808 114 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 2 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01808 Bva-Chr9 12487904 12488248 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01808 1 107 Type I MADS-box Gene Family AT5G60440 46.364 3.78e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01808 SRF-TF 3.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01808 - - mtr:MTR_1g106070 114.775