Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01803 ATGGCAAGAATCAAGAAAACCAATGGCCGCAGAAAGatcgaaatgaagaagatCAGTAAGGAGAGCAATTTGAAGGTGACTTTCTCCAAGCGTCGAAACGGGCTTTTCAAGAAAGCCAGTGAACTCTGCACTCTATGTGCTACTGAGGTTGCTCTAATCATCTTCTCTCCAAGACAAAAGGTATTCTCATTTGGTCATCCTAATGTTGATTATGTGGTTAATCGCTTTTTGTCTGGAGCCCCACCACAGACCTCTGGTTACACGCGAATCGTTGAGGATTTTGGCAATGCCAACCTGTGTAACCTCAATGCAGAGCTAACTGAGCTCTCAGAGCTTGATGACAGTGAGAAAAAGCGTAGTGTGATGCTTAACACGCTGTTAAAGCCTATGCTGGAACAGTGTTGGTGGGCAGGTACCATGGAAGCGATGAACTTGTCTCAGCTTGAGCTATTAAAGGCGTCAATGGAAGTGCTGAAAAGCACTTTCCCTCTTAATGCCAATAGTATCCAGTTTCAAGGTTTTAACCCACCTCAGTTCTTGGCTGGTAGTTCTTCTACCTCAGTTGCCTTGCCACATCAAGCACTAACACCGTTGAATCAGCCTCCAATTTTGCCGACGGATCAAATTTTTGAAGGCAACAGCTTGATGCCACCACTACCAACTAGCCAAGGACTGAACGACTTGAACGGATTTGGTTCTAGATTTTATTG 710 0.4394 MARIKKTNGRRKIEMKKISKESNLKVTFSKRRNGLFKKASELCTLCATEVALIIFSPRQKVFSFGHPNVDYVVNRFLSGAPPQTSGYTRIVEDFGNANLCNLNAELTELSELDDSEKKRSVMLNTLLKPMLEQCWWAGTMEAMNLSQLELLKASMEVLKSTFPLNANSIQFQGFNPPQFLAGSSSTSVALPHQALTPLNQPPILPTDQIFEGNSLMPPLPTSQGLNDLNGFGSRFY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01803 236 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bva09g01803 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 188 - -
Bva09g01803 236 PANTHER MADS BOX PROTEIN 7 188 - -
Bva09g01803 236 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bva09g01803 236 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bva09g01803 236 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bva09g01803 236 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bva09g01803 236 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Bva09g01803 236 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Bva09g01803 236 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Bva09g01803 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01803 Bva-Chr9 12404152 12404862 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01803 4 190 Type I MADS-box Gene Family AT5G60440 47.368 6.78e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01803 SRF-TF 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01803 - - cit:102622898 192.586