Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01792 ATGAGACTCATTGCTTGTCTTTCCatctatttttcaatatgttCTATCTGCTTTGCCATGTTATCAAGCTCGACTGAGCCAGTTAAATCAGTTAATGTCGGTGTGATTCTCGATACAGCTGACGCATGGATTGGCAAGTTGTGTTGGAGTTGCATTCAAATGGCACACTCAGACTTCTACGCCACCCATAGTTACTATAACACCAGGCTTGTTCTCAATGTCACAGATTCCAAAAGTGAGCTGATTGCAGCTGCTTCAGCAGCTGtagatttgattaaaaaagtaGCAGTGCAAGCCATTATAGGGCCACAACACTCGAGGGAAGCCAACTTGATTATACAAGTGTGTAACAAATCAAGGGTGCCAGTTCTTTCATTCTCAGCAACGAGTCCTTCTCTGACTTCCCCTCGGAATCCTTATTTTTACCGAATAGCCCATAATGAGTGTGCTCAAGCTCAAGCCATTTCAGCACTTGTCCAAGGTTTTGAATGGAAAGAAGTGGTTCTCATATACATACAAGACATATATGCAGAGGAAGTGATACCCTGCATAACTAGAGCATTGCAAGAGGCTAATATCCATGTTTCCTATCATGCTGCAATTCCCCATTCACCAGATGATAACCATGTTGTCGAAgagcttaaaaaattaacaactttGACAACCAGAGTCTTCATTGTGCATATGTCTCCCATGCTTGGTTCCCGTCTATTCGCCTTTGCAAGAGAGATCGGGATGATGAGTGAAGGCTACGTTTGGATCCTCACCACTGAAATGACTAACCAATTAGCCTCGTTGAATTCATCCATCATTGATACGATGCAGGGTGTTTTAGGTGTAGGTTCTTATTTTCCTAAGACAAAGGAGTTTCAAGATTTTGAGATTCgatggaaattaaaatttcaacaagaaaatCCTACTACTATAAGACgtgaattgaatattttttgtctatgGGCTTATGATGCTGTAACAGCACTAGCTATGGCAGTTGAGAGAGCCGGGATAAAAGAATTTGGCTTTCAAAAGGCAAGTACAAATTCCAGCAATACAACGGATTTTGAAACTCTTGGGGTTTCATTGAGTGGTCCAAAACTTGGAGAATCACTGTCAAAAACCAGATTTCAAGGCCTTTCAGGAGATTTCAGTTTGCTTGACGGAGAAGTTAACTCATCAATTTTTCAGATAATTAATGTGATTGGTGATGGGAAAAAAGTAGTGGGATTTTGGACACCAGAAAATGGACTGAGAAGAAACCTGGattcaacaaagagagacaCAAACACAAGCACATATTCAACTTCCAAGACCAATTTAGCACTAATTATATGGCCAGGGGACTCTTCCTCTGTTCCTGAAGGACTGGATTTACTAGCAAATGAGAAGAAACTAAGAATAGGAGTTCCAGTTAAACCCAAAAATGGATTTGGCGAATTGGTTAATGTGCATTATGATCCTGATACTGACAGAATAAATGTCAGTGGCTACATTGTAGATGTTTTTAAGGTTGTAATGGATGCATTACCGTACCATGTTCCTTATGAATTCTTCCCATTTAACCCTGGAGACTATGACAACTTCAGCACAGGTTCCTTCTACGATGATTTGATACAGGAAGTCTATCATGGAAAATTTGATGCTGCAGTGGGAGATATAACAATTAGAGCTCAGAGATCACAGTACGTGGACTTCACGTTACCTTTCACAACAAATGAAGCAACTTTTATAGTGCCAACCAAGCagatcaagaacaagaaagaagctTGGATTTTCTTGAAACCCTTGACATGGGAATTATGGGTCACAAGCTTTTGCTTCTTTGTGTTCATTGGTTTTATCGTTTGGGTGCTGGAACACGGACTCAATAAAGAAACTAGGATTTCTCCCTTACATCATGTGGATACCGGCCTTTGGTTTTCCATCTCAACCTTGGTATTTTTACAATGGGAAAGAATCCATGGCAACTTGGCAAGGTTTGTGGTGATGATATGGGTTTTTGTGGTGCTAATATTGACTCAGAGTTATACAGCTAGCTTAACCACACTTTTGACAGTCGAACAACTCCGACCAGCTGTGACTGATATAAACCAGCTCATACAGAGAGGGGACGTTGTTGGATACCAGTATAGTTCCTATTCTATTCAATTCTTAAAGCAAATGGGTTTCGATGAAACCAAGCTTCGAGCTTATGAGACTCCAGAAGAATGTGATCGACTTCTGACAATGGGAAGCAGAAATGGAGGTATCGCAGCTGCCTTTGATGAAACCCCctatataaaagttttgcaGTCAAAATATTGCTCCAAATATACAACCATTGGACCAACTTACCAGAGTCAAGGATTTGGTTTTGCTTTTAGAAGAAACTCACCATTCGTACCTGATGTTTCTAGGGCTATCTTAAACTTAACAGAAAGAAATCAAGATATTGTGAATACATTTGTGAACAAATGGTTCAAGAATGAATCCCATTGTTCACAATCCACCACTGTGGATGCTTCCTATAGTCTGGAACTGGACAGTTTCCGTGGACTATTCCTGTTATCTGGGATTGTCTCATCATCAGCACTCATCATATATACAGTTACTTTCTTATACAAACACAGGCAGGATTTTAAGCAGTTTTATGCAAACGATTCGTTGTGGAAGAGAATTTATGTCATGTTAACAATCACAAGGCAAGATGACAATAGGATTCAAGTTGGAGAACTGGTATCCAGAAGTACAACTACCACTACCAGTAATCTTCATGATATAAATCGCAGTTACTCCGTTGCCTCCATGAACACATTCTCCTATCTTCATTCTAAGGCAGCAACTGCTGGAATGGTTGCCTATCAAGAAGAGTCTGAAGAAAGTTACTCAGAAGAAGATTCAGAAATTCTTAATGATGCAAACTCATCAATCCGAAATACATCGTATACATACCAGAAGCTAATTCCAAAATATAACATTCATGATTCAAGATCAACAAAGTTCAAGAAATCTTCTAGCagcaagaagaaattcaaaaacctAGCTTCTGCCATCAAAGGATCtgctcttcctttttctgatTCGTTCTTGGAAGACCAACACTGGATCATGAACGTTGATGTTGTACAGACTGGATCAACTGATCAAACCGAAGATAATCTGACTTTCAAGATCTTAATGTGTGATGTCGAAATATTAAGGGGTGAGTTTGAAGTATTTGAAGCTCACGCGAtcaagaaaggagaaaataaagtttcatCTAATGTGTtgaatttcaagaaaattttgatcgATTTTGTCGAAGTTTCATTCGAGATTGAGATCTTTAATGAGGATGAACTTGTAGAAGATATGAAGAAAGCTATAGAGGAAGCtgaattggaagaaaaata 3368 0.3685 MRLIACLSIYFSICSICFAMLSSSTEPVKSVNVGVILDTADAWIGKLCWSCIQMAHSDFYATHSYYNTRLVLNVTDSKSELIAAASAAVDLIKKVAVQAIIGPQHSREANLIIQVCNKSRVPVLSFSATSPSLTSPRNPYFYRIAHNECAQAQAISALVQGFEWKEVVLIYIQDIYAEEVIPCITRALQEANIHVSYHAAIPHSPDDNHVVEELKKLTTLTTRVFIVHMSPMLGSRLFAFAREIGMMSEGYVWILTTEMTNQLASLNSSIIDTMQGVLGVGSYFPKTKEFQDFEIRWKLKFQQENPTTIRRELNIFCLWAYDAVTALAMAVERAGIKEFGFQKASTNSSNTTDFETLGVSLSGPKLGESLSKTRFQGLSGDFSLLDGEVNSSIFQIINVIGDGKKVVGFWTPENGLRRNLDSTKRDTNTSTYSTSKTNLALIIWPGDSSSVPEGLDLLANEKKLRIGVPVKPKNGFGELVNVHYDPDTDRINVSGYIVDVFKVVMDALPYHVPYEFFPFNPGDYDNFSTGSFYDDLIQEVYHGKFDAAVGDITIRAQRSQYVDFTLPFTTNEATFIVPTKQIKNKKEAWIFLKPLTWELWVTSFCFFVFIGFIVWVLEHGLNKETRISPLHHVDTGLWFSISTLVFLQWERIHGNLARFVVMIWVFVVLILTQSYTASLTTLLTVEQLRPAVTDINQLIQRGDVVGYQYSSYSIQFLKQMGFDETKLRAYETPEECDRLLTMGSRNGGIAAAFDETPYIKVLQSKYCSKYTTIGPTYQSQGFGFAFRRNSPFVPDVSRAILNLTERNQDIVNTFVNKWFKNESHCSQSTTVDASYSLELDSFRGLFLLSGIVSSSALIIYTVTFLYKHRQDFKQFYANDSLWKRIYVMLTITRQDDNRIQVGELVSRSTTTTTSNLHDINRSYSVASMNTFSYLHSKAATAGMVAYQEESEESYSEEDSEILNDANSSIRNTSYTYQKLIPKYNIHDSRSTKFKKSSSSKKKFKNLASAIKGSALPFSDSFLEDQHWIMNVDVVQTGSTDQTEDNLTFKILMCDVEILRGEFEVFEAHAIKKGENKVSSNVLNFKKILIDFVEVSFEIEIFNEDELVEDMKKAIEEAELEEK 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01792 1122 Gene3D - 476 587 - -
Bva09g01792 1122 Gene3D - 314 467 - -
Bva09g01792 1122 SUPERFAMILY Periplasmic binding protein-like I 31 446 IPR028082 -
Bva09g01792 1122 CDD PBP1_GABAb_receptor_plant 32 420 IPR044440 -
Bva09g01792 1122 PANTHER GLUTAMATE RECEPTOR 2.9 31 906 - -
Bva09g01792 1122 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 906 - -
Bva09g01792 1122 Gene3D - 58 153 - -
Bva09g01792 1122 SMART GluR_14 465 821 IPR001320 GO:0015276|GO:0016020
Bva09g01792 1122 Pfam Bacterial extracellular solute-binding proteins, family 3 530 820 IPR001638 -
Bva09g01792 1122 Gene3D - 154 309 - -
Bva09g01792 1122 Coils Coil 1100 1122 - -
Bva09g01792 1122 Pfam Ligand-gated ion channel 821 851 IPR001320 GO:0015276|GO:0016020
Bva09g01792 1122 Gene3D - 588 726 - -
Bva09g01792 1122 Gene3D - 760 827 - -
Bva09g01792 1122 SUPERFAMILY Periplasmic binding protein-like II 439 821 - -
Bva09g01792 1122 CDD GluR_Plant 462 819 - -
Bva09g01792 1122 Pfam Receptor family ligand binding region 51 401 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01792 Bva-Chr9 12243424 12248175 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01792 9 870 Ion Channels AT2G29120 43.187 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01792 K05387 - qsu:112022976 918.687