Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01784 ATGTTTGGTTCCCGTCTCTTCGCCATGGCAAAAGAGATTGGAATGATGAGTGAAGGCTATGTTTGGATCCTCACCAGTGAAATGACTAACCAGTTGGCCTCcttaaattcttcaattaCTGATACGATGCAGGGTGTTCTAGGTTTAGGTGCATATTTTCCTAAAACGAAGGAGTTTCAACATTTTCAGGTAGGAtggaaatcaaaatttcaacaagaaaatCCCACCATTATAGGACCTGAATTGAACGTTTACTGCCTTTGGGCTTATGATGCTGTAACAGCACTTGCCATGGCAGTTGAGAAGGCTGGGGTCAAAGAATTTGGCTTTCAAAATACAAGTATATATTCCAGCAGtacaacaaattttgaaactgaTCTTGGAGTTTCTTTGATTGGTCCAAAACTCAGAAAATCTCTATCAGAAACCAGATTTCGAGGCCTTTCAGGTAGTAGGATTTTGGACACCAGAAAATGGACTGACAAGAAAAGTCAATTCAACAAAGACACAGACACAGGCACATACTCAACTTCCAAGACCAATTTAGGACCAATTATATGGCCAGGAGACTCTTCCTTTGTACCTGAAGGCTGGGATTTACTAgcaaacagaaagaaattgaGGATTGGAATTCCGGTCGAGCCTGGATATGGATTGGATGAATTGGTTAGTGCGCATTATGATCCAGTTACCAACGGAATAAATGTGAGTGGCTACTGTATAGATGTTTTTAAGGTTGTAATGGACGCATTACCATACCATGTTCCATATGAATTCATTCCTTTTAACCCTAGAGATAATGAGAACTTTAGCACAGGTTCCTTCTACGATGATTTGATGCGGGAAGTCTATCTTGGAAAATTTGATGCTGCGGTGGGAGATACAACGATTCGAGCTGAGAGATCGCTATATGTGGACTTCATGGTACCTTTCACAGAAAATGAAGCAACTTTTATAGTACCAATCAAACAGAAGAGAGTGAAAGACGCTTGCGTCTTCTTGAAACCTTTGACATGGGAATTATGGGTCACAAGTGTTTGCTTCTTTGTGTTCATTGGTTTCGTGGTTTGGCTGCTGGAACGCGGAGTCAATAAAGAAGAATTTAGGGGTTCCCCCTCAGATCAAGTGGGGCAGAGAATCCATAGCAACTTAGCAAGGTTTGTGGTGATCATATGGGTTTTTGTGGGGCTGATATTGACCCAGAGTTATACAGCAAGCTTGACAACACTTTTGACGGTGGAACACCTCCGACCTGCCGTGACAGACGTAAATCAGCTCATACAGAGTGGAGACTATATTGGACACCAACATGGTTCCTCTATTATTGAATTCTTAAGAAAAATGGGTTTTGATGTGACCAAGCTTCGTGTTGTTAATTCTATTGAAGAAAGTGATTACCTTCTAACATTAGGAAGCAGAAATGGAGGTATTGCTGCCGCCTTTGCTGAAACCccatatataaaagttatgcAGTCAAGGTATTGCTCCAAATATACAACCATTGGACCATGTTACCAGAGTCAAGGATTTGGCTTTGTAAGTGCTTTTCAACTTTCCCCGCATATTTA 1568 0.3922 MFGSRLFAMAKEIGMMSEGYVWILTSEMTNQLASLNSSITDTMQGVLGLGAYFPKTKEFQHFQVGWKSKFQQENPTIIGPELNVYCLWAYDAVTALAMAVEKAGVKEFGFQNTSIYSSSTTNFETDLGVSLIGPKLRKSLSETRFRGLSGSRILDTRKWTDKKSQFNKDTDTGTYSTSKTNLGPIIWPGDSSFVPEGWDLLANRKKLRIGIPVEPGYGLDELVSAHYDPVTNGINVSGYCIDVFKVVMDALPYHVPYEFIPFNPRDNENFSTGSFYDDLMREVYLGKFDAAVGDTTIRAERSLYVDFMVPFTENEATFIVPIKQKRVKDACVFLKPLTWELWVTSVCFFVFIGFVVWLLERGVNKEEFRGSPSDQVGQRIHSNLARFVVIIWVFVGLILTQSYTASLTTLLTVEHLRPAVTDVNQLIQSGDYIGHQHGSSIIEFLRKMGFDVTKLRVVNSIEESDYLLTLGSRNGGIAAAFAETPYIKVMQSRYCSKYTTIGPCYQSQGFGFVSAFQLSPHI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01784 522 Pfam Bacterial extracellular solute-binding proteins, family 3 235 503 IPR001638 -
Bva09g01784 522 Pfam Receptor family ligand binding region 4 151 IPR001828 -
Bva09g01784 522 Gene3D - 51 155 - -
Bva09g01784 522 SUPERFAMILY Periplasmic binding protein-like II 184 513 - -
Bva09g01784 522 Gene3D - 5 81 - -
Bva09g01784 522 SUPERFAMILY Periplasmic binding protein-like I 5 198 IPR028082 -
Bva09g01784 522 Gene3D - 330 377 - -
Bva09g01784 522 Gene3D - 378 457 - -
Bva09g01784 522 CDD GluR_Plant 205 520 - -
Bva09g01784 522 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 513 - -
Bva09g01784 522 Gene3D - 201 329 - -
Bva09g01784 522 PANTHER GLUTAMATE RECEPTOR 2.9 2 513 - -
Bva09g01784 522 Pfam Ligand-gated ion channel 378 429 IPR001320 GO:0015276|GO:0016020
Bva09g01784 522 SMART GluR_14 206 521 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01784 Bva-Chr9 12161085 12163483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01784 2 513 Ion Channels AT2G29120 42.000 2.28e-133 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01784 K05387 - qsu:112022976 559.681