Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01781 ATGTGTAACAAAGCTAGGGTGCCAATCCTATCATTCTCAGCAACAAGTCCTTCTCTAATTTCTACTCagaatctttatttttaccgAATAGCCCAGAATGAATGTGCTCAAGCACATGCCATTTCAGCACTTGTCCAAGCTTTTGAATGGAGAGAAGTGGTGCCCATATTCATAGAAGACATGTATTCTGAGGAAGTAATATCCTGCATAACTAGATCCTTGCAAGAAGCTGATGTCCGAGTTTCCTATCAAGCTGCAATTCCCCAGTCACCGGTCGACTATCAAATTGTCCAAGAgcttcacaaattaaataatttgacaaCCAGAGTCTTCGTTGTGCACATGTCTCCCATAGTTGGTTCTCGTCTCTTTGCCATTGCAAGAGAGATTGGGATGATGAGAAAAGGCTATATTTGGATCGTCACCACTGAAGTGACCAACAAATTAGCATCCTTAAACTCTTCCATCACTGATGCGCTGCAGGGTGTTGTAGGTGTAGGTGCCTATTTTCCTAAATCAACGGAGTTTCAAGATTTTCGGGTTcgattgaaattaaaatctcaACAAGAAGACCCCACCATTATAGGATCTGAATTGAATGTTTACTGTCTATGGGCTTATGATTCTGTAACAGCACTAGCCATGGCAGTTGAGAATGCCGGGATCAAGGAATTTGACTTTCAAAATACAAGTACAGGTTCCCGCAATACAACAGATTTTGAAATGCTTGGAGTTTCTTTGAGTGGTCCACAACTTGGTGACTCACTGGTAGAAACCAAATTTCGTGGCCTTTCAGGCGATTTCAGTCTAGTTGACAGTGAAATCAACTCATCAATTTTTCagataattaatgtttttggtGATGGAAAAAGAGTAGTGGGATTTTGGACTCCAAAAAGTGGACTCACAAGAAGACTCGATTCCACAAAGACACACACGGGCACAAACACATATTCAACTTCCAAGTCCAATTTAGGACCAATCATATGGCCAGGGGACTCTTCCTCTGCTCCTGAAGGCTGGGATTTACCGGCAAACAGAAAGATACTCAGAATAGGAGTCCCATTGAAAATCGGATCATTCAGTGAGTTTGTTAAAGTGGATTATGGTCATGGCATGGGCGGAACGATTGTCAGTGGCTACTGTATAGATCTTTTTCAGGCTGTATTACAAGCGTTACCGTACCCAGTTTCTTATGAATTCTTACCTTCTCCCCTTCGGGATTATGACAACCTCACCAGTTCCTACTATGATGATTTGATACAGCAAGTCTACCTTGGAACAATTGATGCTGCTGTGGGAGATATAACAATTACAGCTCAGAGGTCACTGCATGTGGACTTCACGTTACCTTTCACAGGAAATGAAGCAACTTTTATTGTGCCAACCAAGcaagagaacaagaaagatcCATGGATCTTCATTAAACCCTTGACATGGGAATTATGGGTCAcaagtttttgtttctttgtgtTCATTGGTTTTGTGGTTTGGGTGTTGGAACACGGGGTCAACAAAGAATCGAGGGTTCCCCCATCACATCAAGTGGATACAAGtctttggttttctttatCAACGTTGGTATTTTCACAATGGGAAAGAATCCATAGCAAGTTGGCAAGGTTTGTGGTGATCATATGGGTTTTTATGGGACTGATATTGACCCAGAGTTACACAGCTAGCTTGACAACACTTCTGACCGTCGAACATCTAAGACCGACCGTGACTAATATAAATCAGCTGATACAGAATGGGGAATTTGTTGGATTCCAATATGGTTCCTTTACTCTTGAATTCTTAATACGAATGggttttgatgaaaataagCTTCGAGCTTATAAGACTGCAGAAGAATGTGATCGACTTCTAACAATGGGAAGCAGAAATGGAGGTATCGCTGCCGCCTTTGATGAAACCCCATATTTAAAAGTTCTGCTGTCTAGGTACTGCTCCAAATATACAACCATTGGACCTGCGATTCAGACTCAAGGATTTGCTTTTGCATTTCAAAGAAATTCGCCATTTGTACCTGATTTCTCAAGGGCTATCTTAAATTTGACAGAGAGAGACGAAGACATGAAGGCAATTGAAGATAAATGGTTTATGAATAAATCCTTTTGTCCACAACCCTCTAGTGTGGATGCTTCCTATAGTCTGGACCTTGACAGCTTCCGAGGACTATTCGTATTGTCTGGGATTGCCTCATCATCAGCACTCATCATATACGCAGCTGCATTCCTATACAGACGTGGGCGGGAGTTTATGCAGTTCTATTCCAACGATTCACTATGGAAAAGTGTTTGCATCATGTTAACAATCATAAAACAGAAAGGCAATAGAATTCATGCTCAAGAACAAATACATGTGAGTGCAGAAAATGTTTCATA 2387 0.3917 MCNKARVPILSFSATSPSLISTQNLYFYRIAQNECAQAHAISALVQAFEWREVVPIFIEDMYSEEVISCITRSLQEADVRVSYQAAIPQSPVDYQIVQELHKLNNLTTRVFVVHMSPIVGSRLFAIAREIGMMRKGYIWIVTTEVTNKLASLNSSITDALQGVVGVGAYFPKSTEFQDFRVRLKLKSQQEDPTIIGSELNVYCLWAYDSVTALAMAVENAGIKEFDFQNTSTGSRNTTDFEMLGVSLSGPQLGDSLVETKFRGLSGDFSLVDSEINSSIFQIINVFGDGKRVVGFWTPKSGLTRRLDSTKTHTGTNTYSTSKSNLGPIIWPGDSSSAPEGWDLPANRKILRIGVPLKIGSFSEFVKVDYGHGMGGTIVSGYCIDLFQAVLQALPYPVSYEFLPSPLRDYDNLTSSYYDDLIQQVYLGTIDAAVGDITITAQRSLHVDFTLPFTGNEATFIVPTKQENKKDPWIFIKPLTWELWVTSFCFFVFIGFVVWVLEHGVNKESRVPPSHQVDTSLWFSLSTLVFSQWERIHSKLARFVVIIWVFMGLILTQSYTASLTTLLTVEHLRPTVTNINQLIQNGEFVGFQYGSFTLEFLIRMGFDENKLRAYKTAEECDRLLTMGSRNGGIAAAFDETPYLKVLLSRYCSKYTTIGPAIQTQGFAFAFQRNSPFVPDFSRAILNLTERDEDMKAIEDKWFMNKSFCPQPSSVDASYSLDLDSFRGLFVLSGIASSSALIIYAAAFLYRRGREFMQFYSNDSLWKSVCIMLTIIKQKGNRIHAQEQIHVSAENVS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01781 795 Pfam Bacterial extracellular solute-binding proteins, family 3 378 702 IPR001638 -
Bva09g01781 795 SUPERFAMILY Periplasmic binding protein-like I 1 332 IPR028082 -
Bva09g01781 795 Gene3D - 349 469 - -
Bva09g01781 795 Gene3D - 663 701 - -
Bva09g01781 795 Gene3D - 470 609 - -
Bva09g01781 795 Gene3D - 633 662 - -
Bva09g01781 795 Gene3D - 241 348 - -
Bva09g01781 795 PIRSF IGluLR_plant 1 794 IPR017103 -
Bva09g01781 795 SMART GluR_14 349 703 IPR001320 GO:0015276|GO:0016020
Bva09g01781 795 PANTHER GLUTAMATE RECEPTOR 2.9 2 779 - -
Bva09g01781 795 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 779 - -
Bva09g01781 795 Pfam Ligand-gated ion channel 703 734 IPR001320 GO:0015276|GO:0016020
Bva09g01781 795 Pfam Receptor family ligand binding region 1 284 IPR001828 -
Bva09g01781 795 Gene3D - 35 188 - -
Bva09g01781 795 CDD GluR_Plant 348 701 - -
Bva09g01781 795 SUPERFAMILY Periplasmic binding protein-like II 327 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01781 Bva-Chr9 12123892 12127188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01781 1 782 Ion Channels AT2G29100 45.223 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01781 K05387 - qsu:112022976 825.083