Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01779 ATGTCTCCCATACTTGGTTCCCGTCTCTTCGCCATTGCGAAGGAGATTGGAATGATGAGGGAAGGCTATGTTTGGATCGTCACCACTGCAATGACTAACCAATTAGCATCCTTAAACTCTTCAATCACTGATACTATGCAGGGCGCTTTAGGTTTAGGTGCCTATTTTCCTAAAACAAAGGAGTTTCAAGATTTTCAGGTAAgatggaaattaaaatatcaacaagAAAATCCCTCAATTATAGGACCTGACTTGAATGTTTACTGTCTATGGGCTTATGATGCTGTAACAGCACTAGCCATGGCTGTTGAGAAGGCCGGGATCGAAGAATTTGGCTTTCACAAGACAAGTACAGATTGTAGTGATACAACAGATTTTGAAACTCTTGGGCCTTCTTTAAGTGGTCCAAAACTTTCAGAATCACTTTCTGAAACCAGATTTCAAGGCCTTTCAGGGGATATCAGTTTAGTTGACCGAGAAATCAACTCATCAATTTTTCAGATAGTAAATGTGTTTGTCGATGGCAAAAACATAGTCGTATTTTGGACACCAGAAAATGGACTAGCAAGAAAACTCAGTTCAACAGAGAGGGACGCAAACACAGGCATATATTCAACCTCCAGGACTAATTTAGGACCAATTATATGGCCAGGGTATTCTTCTTCTGCTCCTGGAGGCTGGGATTTACTAGCAAACGGAAAGAAACTGAGAATAGTAGTTCCATTTAATACCATATTCAGGGGATTCGTTAATGTGGATTATGATCCTAGTACCAACGGAATAGAAGCTAATGGCTACTGTATAGATGTTTTCAAGGCTGTAATGGAGGCAATGCCTTATCATGTTCCTTATGAATTCATCTCGGTACCTCGAGATCATGGCAACTTCACCCCTGGCTACTATGATCATTTGATAAACGAAGTCTATCTTGGAAAATTTGATGCTGCAGTGGGAGATATAACTATTAGAGCTCAGAGGTCCTTGTACGTGGACTTAACGTTACCTTTCACAGAAAATCAAGCAACATTTATTGTGCCAACCAAGCTGATCGCGAACAGGAAAGAGGCTTGGATTTTCTTGAGACCCTA 1088 0.3998 MSPILGSRLFAIAKEIGMMREGYVWIVTTAMTNQLASLNSSITDTMQGALGLGAYFPKTKEFQDFQVRWKLKYQQENPSIIGPDLNVYCLWAYDAVTALAMAVEKAGIEEFGFHKTSTDCSDTTDFETLGPSLSGPKLSESLSETRFQGLSGDISLVDREINSSIFQIVNVFVDGKNIVVFWTPENGLARKLSSTERDANTGIYSTSRTNLGPIIWPGYSSSAPGGWDLLANGKKLRIVVPFNTIFRGFVNVDYDPSTNGIEANGYCIDVFKAVMEAMPYHVPYEFISVPRDHGNFTPGYYDHLINEVYLGKFDAAVGDITIRAQRSLYVDLTLPFTENQATFIVPTKLIANRKEAWIFLRP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01779 362 Pfam Receptor family ligand binding region 4 168 IPR001828 -
Bva09g01779 362 SUPERFAMILY Periplasmic binding protein-like I 1 183 IPR028082 -
Bva09g01779 362 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 362 - -
Bva09g01779 362 SUPERFAMILY Periplasmic binding protein-like II 213 351 - -
Bva09g01779 362 Gene3D - 126 234 - -
Bva09g01779 362 PANTHER GLUTAMATE RECEPTOR 2.9 1 362 - -
Bva09g01779 362 Gene3D - 235 358 - -
Bva09g01779 362 Gene3D - 1 81 - -
Bva09g01779 362 Pfam Ligated ion channel L-glutamate- and glycine-binding site 258 345 IPR019594 GO:0004970|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01779 Bva-Chr9 12101400 12104286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01779 4 362 Ion Channels AT5G27100 42.897 6.40e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01779 K05387 - qsu:112030674 382.104