Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01673 ATGGCTGATTCCAGGGCTTTCTCTAGACGATCCTCTAATCTGTACCAGCTCTTAGCTGGCGTCATTAAGCGGATTCGATTGGAGAATTTTATGTGCCACAGCAACTTGGAGATTGAATTTGGAGACTGGGTCAATTTCGTCACTGGTCAAAACGGAAGTGGTAAGAGCGCAATTCTGACTGCATTATGTGTTGCATTTGGCTGTCGAGCTAAAGGGACTCAAAGAGCATCAACATTGAAGGATTTCATAAAAACTGGTTGCAGTTCTGCTGCCATCCATgtggaaataaaaaacaacGGGGATGATGCTTTTAAGCCTGATATATATGGCGATGTCATCATTGTTGAGCGGAAGATATCTGAATCCACTAATTCCATTGTATTGAAAGATTTCCAAGGTAAGAAGGTTGCCAGTCGGAAAGCAGAACTCCAGGAAATTGTGGAACATTTCAATATTGATGTGGAGAATCCATGTATTATTATGAGTCAAGATAAAAGCAGAGAATTTTTGCATTCTGGGACCGACAAAGATAAATTCAAGTTCTTTTACAAGGCTACCCTTCTTCAGCAAGTAAGTGAACTTCTGGAAACTATTTCAAAAGAGCTGAATCAGGCATCTGGATTAGTTGGTGGATTAGAGGATACCATAAAGCCCATAGAAAAGGAACTCCAGGAGCTGAGAgtcaagattaaaaatatggAACACGTTGAACAAATTGTTCAGCAGATTCAGCagttaaagaaaaagcttGCATGGGCATGGGTTTATAATGTGGACAAACAACTCAAGGAACAAAGCATAAAGATTGAAAAGCTCAAGGATCGGATACCCACTTGCCAAGCTAAAATTGATTACCAAAAGGGTCTGGTTGAAGAATTGAAGGAGcgttttaacaagaaaaaagctCAAATTTCAAGCATGCTGGGAAGAACGTCAGAAGTGAATGAGATGAAGGCAAAATTAGAGAAATCTATTTCCATGGCAACAAAAGAAACACTTGAACTAGAACAAGAGTGTGACCGCCTAACTATCAACATTGAGAAGATGGTACATCGTGTTAGGACTCTGGAGCAACAGGTGCAAGATATTCGTGAGAAGCATGAAAAAGATACTCAGGCTGAAAAATGTGAAATGGAGGAGAGACTGCATGGACTTCACAATGAGGTTGAAGCTGCTCAGTTAGCTCTGAGAAGGTTAACAGATGAAGAGGCTGTGATAACTGAAAGTTTACGgcaacaaaataatgaaatcagAAAGATTGCTGATCAGATTGAAGAACATGAAAAAAGACATCGTGAGTGCCTTCATCATATCCGTGAACTTCAACAACACCAAACCAATAAGGTTATAGCTTTTGGAGGAGAGAGAGTGATGAATCTATTACGCATCATTGAAAGACGTCATCAGAGATTTAAGAGGCCGCCTATTGGTCCAATTGGTTCTCATTTGAATTTGGTTAATGGTGATAAATGGGCTGTTGCTGTTGAACATGCAATTGGGAAGATGCTCAATTCTTTTATAGTGACTGATCATAAGgattctcttcttttaagaGAATGTGCTAGGGAAGCCCATTATGGTCAtcttcaaattataatttatgatttttctagaCCAAGATTGATTATACCACAGCACATGCTTCCCCAGACAACAGAGGGCCCATCAGTTCTTTCTGTTTTACATTCAGAGAATGAAACCGTTATTAATGTGTTGGTGGATCTGGGGAGCATTGAGAGACAAGTGCTTGTTAGGGATTATGATGCTGGAAGAGTGGTTGCTTTTGAACAAAGGATCTCAAATTTGAAGGAGGTTTATACCTCCGATGGATATAAAATGTTTTCTCGAGGTTCAGTGCAGACTGTTCTTCCCCCAAATAAGAGGCTGAGAACTGGGCGTTTATGTAGTTCTTTtgataatgatattaaaaGTCTCGAACATGATGCATcacaacaaaaggaaatagcTGATGACTGCAGGAGGAGTAAAAGAGAGGCAGAGATAAAGCTTGAAGATCTTGATAGGAAATTGAAACACATAAAGaGGTTGTGTTTAACTGCGGGGAAAGATTTGTCTTCTAAGAGACTAGctttggaagaagaaaaggaccGCTATGCTGCAGAAAACCGTTTGCCATCTGCATCATCTGTTGATGAGCTTCATCATGAAATTTCAGAAATGCATGAGGCAATAcagcaaaagaaaagcttgCTGGAAGAACATCAAGGCAGGAGGCATGAAGCAGCAGAAAAGGCAACAAATCTTAAAGTATCATTTCAGCAACTATGTGaatCTGCACGGGGGGATATTGATGCCTTTGATAAAGAAGAACGTGCACTTGTGCAGATTGAACGAGACATGCGTTCAGCAGAAGAGGAGAAGATTCATTATGATGGTGTAATGAAACACAAGGTCCTTCATGACATCAAGGAGGCAGAAGTGTACCATCTGAAGCTTAAGGAGCAGAGGGAGGAGAACTGCAGAAAGGCTTCTATATATTGCAATGAGGAGGAAGTTGACTCTTTAGGTGGTTGGGATGGAAGCACACCAGAGCAACTCAGTGCACAGCTTGAAAGACTGACTCAGAGGCTTAATCGCGAAAGTCAAAGATACTCAGAATCAATTGATGATCTTAAGATGCAGTATGAGAAAAAAGAGcgtaaaattagaaaaaggcAGCAAGTTTACAAAGCCCTCCGAGGGAAGTTGGCCGCTTGCCAGAGTGCACTAAACTTAAGGGTAAACAAGTTCCATAGAAACGCAAAATTTTTGAAGCGCCAGTTGAATTGGCGTAGATTTAATGGCAATTTGGGAAGGAAGGGAATCAGTGGAGTTATTACAGTAAATTATGAGGAGAAAACCCTGTCAATTGAGGTAAAAATGCCCCAAGATGCAACAGGCAGCACCGTTCAGGATACAAGGGGACTTTCAGGTGGGGAACGTTCTTTTTCAACATTATGCTTTGCATTAGCCCTTCATGAAATGACAGAAGCTCCATTTCGAGCTATGGATGAATTTGATGTCTTTATGGATGCTGTTAGTCGAAAAATCAGCCTGGACACTCTCGTAGATTTTGCTGTGGAACAAGGATCCCAGTGGATATTTATAACACCGCATGACATTAGCATGGTTAAGCAAGGGGATAAGATAAAGAAGCTGCAACTAGCAGCACCTCGTTCTTG 3182 0.3843 MADSRAFSRRSSNLYQLLAGVIKRIRLENFMCHSNLEIEFGDWVNFVTGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSSAAIHVEIKNNGDDAFKPDIYGDVIIVERKISESTNSIVLKDFQGKKVASRKAELQEIVEHFNIDVENPCIIMSQDKSREFLHSGTDKDKFKFFYKATLLQQVSELLETISKELNQASGLVGGLEDTIKPIEKELQELRVKIKNMEHVEQIVQQIQQLKKKLAWAWVYNVDKQLKEQSIKIEKLKDRIPTCQAKIDYQKGLVEELKERFNKKKAQISSMLGRTSEVNEMKAKLEKSISMATKETLELEQECDRLTINIEKMVHRVRTLEQQVQDIREKHEKDTQAEKCEMEERLHGLHNEVEAAQLALRRLTDEEAVITESLRQQNNEIRKIADQIEEHEKRHRECLHHIRELQQHQTNKVIAFGGERVMNLLRIIERRHQRFKRPPIGPIGSHLNLVNGDKWAVAVEHAIGKMLNSFIVTDHKDSLLLRECAREAHYGHLQIIIYDFSRPRLIIPQHMLPQTTEGPSVLSVLHSENETVINVLVDLGSIERQVLVRDYDAGRVVAFEQRISNLKEVYTSDGYKMFSRGSVQTVLPPNKRLRTGRLCSSFDNDIKSLEHDASQQKEIADDCRRSKREAEIKLEDLDRKLKHIKRLCLTAGKDLSSKRLALEEEKDRYAAENRLPSASSVDELHHEISEMHEAIQQKKSLLEEHQGRRHEAAEKATNLKVSFQQLCESARGDIDAFDKEERALVQIERDMRSAEEEKIHYDGVMKHKVLHDIKEAEVYHLKLKEQREENCRKASIYCNEEEVDSLGGWDGSTPEQLSAQLERLTQRLNRESQRYSESIDDLKMQYEKKERKIRKRQQVYKALRGKLAACQSALNLRVNKFHRNAKFLKRQLNWRFNGNLGRKGISGVITVNYEEKTLSIEVKMPQDATGSTVQDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWIFITPHDISMVKQGDKIKKLQLAAPRS 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01673 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 1052 IPR027417 -
Bva09g01673 1059 SUPERFAMILY Smc hinge domain 414 616 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva09g01673 1059 Coils Coil 773 793 - -
Bva09g01673 1059 Coils Coil 656 683 - -
Bva09g01673 1059 CDD ABC_SMC6_euk 963 1059 - -
Bva09g01673 1059 Pfam RecF/RecN/SMC N terminal domain 22 1052 IPR003395 -
Bva09g01673 1059 Coils Coil 382 444 - -
Bva09g01673 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 19 1059 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bva09g01673 1059 Coils Coil 290 310 - -
Bva09g01673 1059 Gene3D - 21 172 IPR027417 -
Bva09g01673 1059 Coils Coil 216 236 - -
Bva09g01673 1059 CDD ABC_SMC6_euk 22 176 - -
Bva09g01673 1059 Gene3D - 814 1055 IPR027417 -
Bva09g01673 1059 Coils Coil 731 751 - -
Bva09g01673 1059 Coils Coil 857 895 - -
Bva09g01673 1059 Coils Coil 318 373 - -
Bva09g01673 1059 Gene3D - 185 349 - -
Bva09g01673 1059 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01673 Bva-Chr9 10362887 10388099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01673 19 1059 Structural Maintenance of Chromosomes family AT5G61460 60.423 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01673 K22804 - zju:107414226 1391.71