Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01642 ATGTATATCAAAGAGATTTGCTTGGAAGGTTTCAAATCGTATGCTAATAGAACTGTTGTCCCGGGTTTTGATCCTTTCTTCAATGCCATTACGGGGTTGAACGGTTCTGGCAAGTCGAACATACTTGATTCGATTTGCTTTGTGTTGGGTATCACGAATTTGCAGCAGGTTCGAGCTTCAAACCTTCAGGAGCTCGTGTATAAGCAAGGGCAAGCAGGGATTACGAAGGCCACAGTATCGATTGTGTTTGATAATTCGGATAGGAGTAGAAGCCCATTTGGATATGAAGATCATCCAGAGATTACAGTCACAAGACAGATTATTGTTGGAGGGAGGAACAAATATTTGATCAATGGGAAACTTTCCCAACCTAGTCAAGTTCAAAACCTTTTTCATTCAGTGCAGCTTAACGTTAACAACCCACATTTCCTCATTATGCAAGGGCGCATCACCAaggttttaaatatgaaaccaCTAGAGATATTATCTATGCTCGAGGAAGCTGCAGGGACAAGAATGTATGAGTCTAAGAAAGAGAATGCTCTGAAAACACTTGAGAAGAAGCAGAATAAGGTTGATGATATCGATAGCCTTCTTAATCGGGAGATAATACCTGCTTTGGAGAagttaagaaaagaaaggatgcAGTACACACAATGGGCTAATGGCAATGCTGAGTTAGATAGGCTAAGAAGATTTTGTATTGCTCATGAATATGTGCAAGCAGAGAGAATTAGAGACAGTGCTGTGTCTGAGTTAGAACATGTAAAGGCCAAGATAGCTGAGATTGATGATGGTAATAAGAAGAATCAGGCAGAAGTAGAggaaatggagaagaaaatagCAAAGTTGACTGCTGAAAGGGAAGCATGCATGGGGGCAGAAGTGAAATCTTTGTCAGAGATGGTGGATGGACTTGCCCAGGATCTTGTGAGGGAAACGTCAGTTCTGAATAATAAAGAGGACACTCTGAGGACTGAAAAAGCCAATGAACAAAATaTTGTTAGTAATATTGAAGACCTGAAGCAGTCTATAGAAGCCAAGGCCTCTGCTGTTAAAAAGGCTGAAGAGGGAGTCGTAgatctaaaaaagaaagttgatgaACTTGCTAAGAGTCTGGAGGAGCATGAAAAGGAGTACCAGGGTGTATTAGCTGGAAAGAGTAGTGGAAATGAGGAGAAGTGCTTAGAGGATCAGCTTGCTGATGCCAAAATTGCAGTTGGGGGTGCTGAAACAGAACTGAAACAGCTCAAGACCAAAATCAGTCACCGTGAAAAGGaactgaaagagaaaaaagatcaATTAAGGTCAAAACGTGAGGAAGCTATTACTGTAGAAAATGAGCTCAatgcaagaagaaaagatgTAGACAATGCCAAAATGGAATTGGAATCTCTTCCTTACAAAGGGGGCGAGATGGAAGCTTTGCAAAAGgAACGTGCTTCTGAGATGGAATGGGTGCAAAAGTGGAAGGATGAAATACGCGATCTTTCAGGTCAATTAGCAAATGTTGAATTCACATACCGTGACCCAGTCAAGAACTTTGACAGGTCAAAGGTGAAGGGCGTGGTAGCAAAACTTATCAAAGTAAAGGATAGATCCGCAATGACTGCCCTAGAGGTTACTGCTGGTGGAAGGTTGTTTAATGTTGTCGTTGATACAGAAACTACTGGAAAACATCTTCTGCAGAATGGTGATCTAAGAAGAAGAGTAACGATTATACcattgaacaaaatacaacCTCATACTGTTCCCTCGAGGGTTCAACAAGCTGCTTCTAGATTAGTTGGCAAGGAGAATGCTGAATTGGCACTTTCTTTGGTTGGCTATGTTGAAGAATTGGAGagTGCTATGGAACATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTGATGCTGCAAAGGAGGTGGCTTTTAATCAGGAAACTCGGACCCAAAGTGTCACTCTTGAAGGAGACATATTTCAGCCTAGTGGTCTTCTGACTGGTGGAAGCCGGAAGGGTGGCGGTGATCTTTTAAGGCAACTTTATGCTTTGGCAGAGGCTGAGTCAAAGCTTTCAATACACCTAAGAAGGTTGTCTGAGATTGAAGCACAGATTGAAAAGCTGCTTCCTCTTTATAAAAGATTCAAGGACCTCAAGACACAATTAGAACTCAAGTCATATGACCTTTCATTATTCCAGGGCAGGGCTGAGCAAAATGAGCATCATAAGCTAGGTGAATTAGTAAAAAAGATAGAGCAAGAGCTTGAAGAAGCAAAATCTACAGTCAAGGAAAAGCAACTTTTGTATGAAAACTGCCTCAAGTCAGtttcaaaaattgagaaatcaaTCAAAGAACATGACAATAACCGGGAGAGTAGGCTGAAagaattggagaaaaaaataaagtcaatcAGATCTCAAATGCAGTCTTCTTTGAAAGATCTCAAGGGACATGATAATGTAAAGGAGAGGCTTGTAATGGAAATGGAAACTGTTATCCAGGAGCATTCATCCTTGGAAAGTCAACTAGCGTCTTTGAGAACACAGATTAATAATCTTATTTCTGAAGTAGAAGTGCAAAGATCCAGGGTTGCTGCTGCAAGGGATAACCATGATCAGATTCAGTCAGAGCTAGACTCAGTACGCCTGAAAATGAAGGAATGTGATAAGGAAATCAGTGACATTGTTAAGGAGCAAAAAAACCTTGAACAGAAACTTAGCGAGAGTAATCTTGCTAGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAGATGGAACAGAAAGACTGTTCTGCCAGGGTGGATAAATTGGTGGAGAAGAATTCATGGATATCATCGGAAAAAAAGCTTTTTGGTAGAAGTGGGAGtgattatgatttttcttctcgTGATCCTTGTAAAGCAAGGGAAGAACTTGAGAAGCTTCAGACTGAACAGTCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTTGTGGCGATGTTTGAGAAGTCAGAAGAGGAGTATAATGCATTGATTTCCAGGAAAAACATAATTGAGGCGgacaagattaaaataaagaacgTGATTGAAGAGCttgatgagaagaaaaaggcGACATTAAGTGTTACTTGGGACAAAGTTAATAATGACTTTGGATCCATCTTTTCTACTCTATTACCGGGGGCAATGGCTAAATTAGAACCTCCTGAAGGATGCAATTTTCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAGGTGTGTGGAAACAGTCCTTGTCAGAATTGAGTGGAGGTCAACGATCACTCCTTGCACTTTCTCTGATTCTAGCACTTCTTCTATTCAAACCTGCTCCACTTTACATCCTAGATGAGGTTGACGCGGCTCTTGACTTAAGCCACACACAAAACATagggaaaatgataaaagctCACTTTCCACATTCCCAGTTTATTGTGGTTTCACTAAAGGAAGGCATGTTCAACAATGCAAATGTTATTTTCTGGACAAAATTTGTTGATGGTGTTTCAACTGTTCAGAGAACCGTTGCTAAGCCGAACAAGTG 3527 0.383 MYIKEICLEGFKSYANRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPFGYEDHPEITVTRQIIVGGRNKYLINGKLSQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPLEILSMLEEAAGTRMYESKKENALKTLEKKQNKVDDIDSLLNREIIPALEKLRKERMQYTQWANGNAELDRLRRFCIAHEYVQAERIRDSAVSELEHVKAKIAEIDDGNKKNQAEVEEMEKKIAKLTAEREACMGAEVKSLSEMVDGLAQDLVRETSVLNNKEDTLRTEKANEQNIVSNIEDLKQSIEAKASAVKKAEEGVVDLKKKVDELAKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLADAKIAVGGAETELKQLKTKISHREKELKEKKDQLRSKREEAITVENELNARRKDVDNAKMELESLPYKGGEMEALQKERASEMEWVQKWKDEIRDLSGQLANVEFTYRDPVKNFDRSKVKGVVAKLIKVKDRSAMTALEVTAGGRLFNVVVDTETTGKHLLQNGDLRRRVTIIPLNKIQPHTVPSRVQQAASRLVGKENAELALSLVGYVEELESAMEHVFGSTFVCKTIDAAKEVAFNQETRTQSVTLEGDIFQPSGLLTGGSRKGGGDLLRQLYALAEAESKLSIHLRRLSEIEAQIEKLLPLYKRFKDLKTQLELKSYDLSLFQGRAEQNEHHKLGELVKKIEQELEEAKSTVKEKQLLYENCLKSVSKIEKSIKEHDNNRESRLKELEKKIKSIRSQMQSSLKDLKGHDNVKERLVMEMETVIQEHSSLESQLASLRTQINNLISEVEVQRSRVAAARDNHDQIQSELDSVRLKMKECDKEISDIVKEQKNLEQKLSESNLARKRMENEVKRMEMEQKDCSARVDKLVEKNSWISSEKKLFGRSGSDYDFSSRDPCKAREELEKLQTEQSGLEKRVNKKVVAMFEKSEEEYNALISRKNIIEADKIKIKNVIEELDEKKKATLSVTWDKVNNDFGSIFSTLLPGAMAKLEPPEGCNFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGKMIKAHFPHSQFIVVSLKEGMFNNANVIFWTKFVDGVSTVQRTVAKPNK 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01642 1175 Coils Coil 736 763 - -
Bva09g01642 1175 Coils Coil 817 928 - -
Bva09g01642 1175 CDD ABC_SMC2_euk 1 172 IPR027120 GO:0005524|GO:0016887
Bva09g01642 1175 Coils Coil 1006 1026 - -
Bva09g01642 1175 Gene3D - 517 675 - -
Bva09g01642 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1162 IPR027417 -
Bva09g01642 1175 Pfam RecF/RecN/SMC N terminal domain 2 1159 IPR003395 -
Bva09g01642 1175 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva09g01642 1175 Gene3D - 994 1173 IPR027417 -
Bva09g01642 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1172 - -
Bva09g01642 1175 Coils Coil 260 294 - -
Bva09g01642 1175 Gene3D - 577 667 - -
Bva09g01642 1175 Gene3D - 1 201 IPR027417 -
Bva09g01642 1175 SUPERFAMILY Smc hinge domain 478 685 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva09g01642 1175 Coils Coil 171 198 - -
Bva09g01642 1175 PIRSF SMC 1 1155 IPR024704 GO:0005524|GO:0016887
Bva09g01642 1175 Coils Coil 782 809 - -
Bva09g01642 1175 Coils Coil 679 699 - -
Bva09g01642 1175 Coils Coil 400 452 - -
Bva09g01642 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1172 - -
Bva09g01642 1175 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bva09g01642 1175 Gene3D - 801 891 - -
Bva09g01642 1175 Coils Coil 338 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01642 Bva-Chr9 10080740 10091384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01642 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 1.15e-07 54.3