Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01629 ATGGCTTTGATGGTTGTAGCAGTCTCGGCAGTTTCGACAGTGTTAAGCATTGTAGGTCTTCAATTTTGGACAGAGTTGTCATTAGATAAACTTAAATCAGATGGACTGATCAGCAAGAATTCGATTGATTCGGAAAATGCCATCCATGCCATTGAGTTGCTATTGGGATCTTATGCCACCATAGGGCTGCTggcaaattttataattaatgtatttatcCTGCTCAATCTTTGTCTTAAGGCTATTTTCTTCTCGGAGTTGTATCCTTCTGAAACTCGGAAACTGGTCGAGCATCTCATTAACTATGTCATTTACAagGGAACGTTTCTACCACTAATTGTGCCACCAACAATATATCATGCTGGTCTGTGGTCAACCTGGCTGATTGTACTATGCTCTTTAAAGatgtttcAAGCTTTGGCCAGAGATCGTTTGGAGCGGTTGAATGCATCTCCATCCACTACACCCTGGACATATTTTCGTGTATATTCAGCATTGTTATTTGTTCTTCTTGTTGATGTTTTCTGGATAAGGCTATGTCTGGTTATATACAAGACACTTGGTTCTTCTATGTTATTGTTGCTGTTCTTTGAGCCTTTGAGTATTGCTTTTGAGACTCTACAGGCTATTTTGGTGCACGGGTTCCAGTTGCTTGATATATGGCTCCATCATTCAGCATACACCAGTGCTTGTTGCCAAAGGTCCAAGTTTTTTGATGCATTAACTGCAGGATCAATATTGGAATGGAAGGGGGTTCTTGTGCGGAACTTGGGATTCTTTTTAGACATGGCAACTTTCTTAATGGCCCTTGGCCATTACTTACATATTTGGTGGCTTCATGGCATGGCATTCCACCTTGTAGATGCAATGCTATTTCTGAACATACGTGTAAGTATGTGTGAATTGCTTAGTGCAATGATAAAACGTGTGAAAGGCTTTATCAGGTTAAGAACAACTCTTGGTGCACTTCATGCTGCTCTTCCTGATGCAACAACTGAGGAGCTACGGGCATATGATGATGAATGTGCTATCTGTAGGGAACCCATGGCGAAGGCTAAAAGGCTAAACTGCAAACATCTTTTCCATCTTGCATGTTTAAGATCTTGGTTGGACCAAGGCCTGACTGAAATTCATACTTGTCCAACTTGTCGGAAGCCACTCTTTGTTGGTCGTCCTGTAAACGAAGCAAACTCTAATACCGGGGAAGTATCAAGTAATGAGCAGCCCGCGCTTCAAATGAGTGCAAGACTTGATCGATCAAACTCTGCTAGATTATATCCCAACCAGACGCCAAACTCTGTGGGTGCAGGAGTAGACTCAGGTTGGTTgcattcttggccaaatcaaAGTGTTGATGGGGCTGGTCCATCTACTGCTATCAGGCCAGTTGGTTTAGGAAGAGTCCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGACTGCTCTTGAAGATACTGCTTGGAGCCTTTGGCCCATTAACCCCTCTCAGGCTTCTGCAAGTGGTACAGCCATTCCCCCGGCTGGCGGAAGATTTCTTGCACTCTCTGATGGTTTACACGTGAGGACTCCTTCACAGTCCACAGATGATGATTTGGCAAATTTACTTGCTATGGCCGAGACAGTTCGGGAGGTTCTTCCTCATATAACAGATGATGTAATTTTCCAGGACTTGCAGCGGACAAATTCGGTCACGGTTACTGTGAATAATCTTCTCCAAATGTG 1736 0.4222 MALMVVAVSAVSTVLSIVGLQFWTELSLDKLKSDGLISKNSIDSENAIHAIELLLGSYATIGLLANFIINVFILLNLCLKAIFFSELYPSETRKLVEHLINYVIYKGTFLPLIVPPTIYHAGLWSTWLIVLCSLKMFQALARDRLERLNASPSTTPWTYFRVYSALLFVLLVDVFWIRLCLVIYKTLGSSMLLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHSAYTSACCQRSKFFDALTAGSILEWKGVLVRNLGFFLDMATFLMALGHYLHIWWLHGMAFHLVDAMLFLNIRVSMCELLSAMIKRVKGFIRLRTTLGALHAALPDATTEELRAYDDECAICREPMAKAKRLNCKHLFHLACLRSWLDQGLTEIHTCPTCRKPLFVGRPVNEANSNTGEVSSNEQPALQMSARLDRSNSARLYPNQTPNSVGAGVDSGWLHSWPNQSVDGAGPSTAIRPVGLGRVQMMMRHLASVGETYAQTALEDTAWSLWPINPSQASASGTAIPPAGGRFLALSDGLHVRTPSQSTDDDLANLLAMAETVREVLPHITDDVIFQDLQRTNSVTVTVNNLLQM 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01629 578 SUPERFAMILY RING/U-box 330 392 - -
Bva09g01629 578 Pfam Ring finger domain 340 384 IPR001841 -
Bva09g01629 578 ProSiteProfiles Zinc finger RING-type profile. 342 384 IPR001841 -
Bva09g01629 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 391 IPR013083 -
Bva09g01629 578 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 578 - -
Bva09g01629 578 Gene3D - 537 577 - -
Bva09g01629 578 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 578 - -
Bva09g01629 578 ProSiteProfiles CUE domain profile. 538 578 IPR003892 GO:0043130
Bva09g01629 578 Pfam CUE domain 542 578 IPR003892 GO:0043130
Bva09g01629 578 SMART ring_2 342 383 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01629 Bva-Chr9 9957583 9965517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01629 58 402 C3H Transcription Factor Family AT3G16090 27.123 2.73e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01629 K10636 - gmx:100819656 890.567