Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01580 ATGGTTTTGAGGTTCAATCCAGCTGGTTTCAATGAATTGATTGTCACCGACACGGGGAAGGTCATGGAGAAAAGCCAGGTCAATGCAGATGAAAATCTCAAGTCTTTACAATCCTCGTCTTCAATTATTGCCGTAGCTATCAAGGGAAACAAGCAAAGCAATTATGTGTTAAAATGGGCACTGAATAAGTTTGCTCCAGAGGGAAAGATTATCTTCAAGCTGATTCATGTCCAAGCTGCTATAAAAGGAGTCCCAACACCAATGGGAAATGTCATTCCTATCTCACAAGTGCGCAATGACGTGGCAGCCGcttttaaaaaggaaatggagTGGCAGACAAGTCAATTGCTTCTTCATTTTAAGAACATGTGTGATCAGAGaaagGTGCAAGTAGATGTCGTGATGATTGAATCTGATGACGTGGCAACTGCAATAGCAAAGGAAGTTGCTAAAGGTTCCTTAACCAAACTTGTCATAGGAGCTTCATCTCTTGGCTTTTTCGCAAGTAAACAAAAGGGTCTATCTGCAAAAATTTCTCTATGCACACCCAGATTTTGTACAGTATATGCtgtttcaaaaggaaaattgtcTTCTGTACGGCAAGCAGATATACAAACTGATGGAAGCATTGCAGATGATCGTAGTGAAAGCAGTTTTTCCACCAATAGCTCATCAAACTACACTTCCACCTCTCAAACAGACTCTGGCTCGCTTGCTTCATCTTCACGAAATGCTTCCTTGGCACTGCAGCGATTCCAATCTCTCTCAACTATAAATCAGACCCTTAAAAGAACAAAGTCTTGTTTAGCTGAACTTGAAACTAACCATTCTAGTCACAACTCTCTAGATTATGGGAAAGAGAATAATGTTACAAGTCCTCCTTTAAAATCTAGTTTACTTGAAGTTGAAATTGACCATTCTGGGCACCAATCTTTAGATCATGGTAAGGAGAACAATGTTACAAGTTCTCCTTTAAAATCAGATATTGGCGATCCTATTAGCCGGGTCTCTAGTTGCAGAACCACGCGATCAGATACCGAATCATGGGTTGCTGAACAAATTGTCACCACAGATGTGCCATTAGCAACCGAGTTTTCTTCACCTAATAATCAGgatcaaacaaatttcaacCTAGAGCTGGAAAAGTTGAGGATCGAACTAAGACGTGCCCAAGGATTGCATTTAGCAGCTCAAAGTGAAAATATTGATGCATCGCGAAAGGTAAATGATCTAAGTAAGAGGCGATTAGAGGAATCAATGAAACTCGAGGAAGTTATTGCTAAGGAGGAGAAGGCCAAAGAATTAGCAGtaagagagagggagaaatATGAAACTGTAAAAAGAGATGCTGAGTATTTGAAAGAATGTGCTGAAAGAGAAGCtgcagaaagaaaaggagtaGAGATTAAAGCTGTACTTGCTGcccaagagaagaaaaaactagAGGACGCTCTTAGTGGTTCATCTCCCCAGTACAGGGAGTTTGAATGGGATGAAATTGTTTCTGCTACTTCATCTTTTTCCGAAGACCTGAAAATTGGAATGGGAGCTCATGGAACAGTGTACAAGAGCAATTTGTTTCATACAACCGTGGCCGTTAAAGTTCTTCACTCTAATGGGAGCCACAAAAACAAGCATTTCCTACAGGAGGTAGAAATCTTTAGTAGAATTCGTCATCCAAATTTACTTCTCCTTCTTGGCGCATGTCCGGATCGTGGATGCCTTGTATACGAATACATGGACAATGGTAGCTTGGATGATAGGTTACTCCGAAAGAATGGTACACCTTCAATACCTTGGTTTGCAAGATACCGAATTGCTTGGGAAGTAGCCTCAGCTCTTGCATTTCTTCACAACTCAAAGCCAATGTCTATCATCCATCGTGATATGAAACCAGCAAACATCTTGCTTGATCGTAACCTTGTGAGCAAGATTAGTGATGTTGGCCTTTCTACAATGCTTGATTCAGACAATTTGTCTACCATTTACAAGGACTCAGGACCTGTTGGGACACTCTGCTACATCGATCCCGAGTACCAAAGGACCGGGTTAATATCTCCGAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCTGCAATAGCACTCACACATGTGGTAGAAACAGCAATTGAGAATGGAAACTTAACAGATATATTGGATCCAGAGGCAGGAAGTTGGCCATTTCAGGAGACACTAGAGTTAGCTCGGTTGGGACTGAACTGTGCAGAACTTAGGCGTAGAGACAGGCCAGATTTGAAAGATCATGTTATTCCAACATTGGAGAGATTGAAGAAAGTTGCTGATAGAGGACAAgattctgcttctgcttgtACTTCAAGTGTTATATCCAGACCCCCTAGTCACTTTATCTGCCCAATACTTCAGGATGTTATGGATGATCCTTGTGTTGCCGCGGATGGATACACGTATGATCGTAAGGCAATTGAAATATGGTTTCAAGAGAATAACAAATCACCAATGACAAATATGGCATTGCCTCACAAGAGCCTAATTCCAAATTACACGCTTCTATCGGCAATCGTGGAGTGGAAGTCAAGACAGTG 2588 0.3926 MVLRFNPAGFNELIVTDTGKVMEKSQVNADENLKSLQSSSSIIAVAIKGNKQSNYVLKWALNKFAPEGKIIFKLIHVQAAIKGVPTPMGNVIPISQVRNDVAAAFKKEMEWQTSQLLLHFKNMCDQRKVQVDVVMIESDDVATAIAKEVAKGSLTKLVIGASSLGFFASKQKGLSAKISLCTPRFCTVYAVSKGKLSSVRQADIQTDGSIADDRSESSFSTNSSSNYTSTSQTDSGSLASSSRNASLALQRFQSLSTINQTLKRTKSCLAELETNHSSHNSLDYGKENNVTSPPLKSSLLEVEIDHSGHQSLDHGKENNVTSSPLKSDIGDPISRVSSCRTTRSDTESWVAEQIVTTDVPLATEFSSPNNQDQTNFNLELEKLRIELRRAQGLHLAAQSENIDASRKVNDLSKRRLEESMKLEEVIAKEEKAKELAVREREKYETVKRDAEYLKECAEREAAERKGVEIKAVLAAQEKKKLEDALSGSSPQYREFEWDEIVSATSSFSEDLKIGMGAHGTVYKSNLFHTTVAVKVLHSNGSHKNKHFLQEVEIFSRIRHPNLLLLLGACPDRGCLVYEYMDNGSLDDRLLRKNGTPSIPWFARYRIAWEVASALAFLHNSKPMSIIHRDMKPANILLDRNLVSKISDVGLSTMLDSDNLSTIYKDSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIENGNLTDILDPEAGSWPFQETLELARLGLNCAELRRRDRPDLKDHVIPTLERLKKVADRGQDSASACTSSVISRPPSHFICPILQDVMDDPCVAADGYTYDRKAIEIWFQENNKSPMTNMALPHKSLIPNYTLLSAIVEWKSRQ 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01580 862 Gene3D Transferase(Phosphotransferase) domain 1 580 789 - -
Bva09g01580 862 SMART Ubox_2 796 858 IPR003613 GO:0004842|GO:0016567
Bva09g01580 862 CDD STK_N 42 194 - -
Bva09g01580 862 MobiDBLite consensus disorder prediction 307 344 - -
Bva09g01580 862 Pfam U-box domain 794 860 IPR003613 GO:0004842|GO:0016567
Bva09g01580 862 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 38 859 - -
Bva09g01580 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Bva09g01580 862 Coils Coil 380 400 - -
Bva09g01580 862 SUPERFAMILY RING/U-box 787 861 - -
Bva09g01580 862 PANTHER OS02G0152300 PROTEIN 38 859 - -
Bva09g01580 862 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 168 - -
Bva09g01580 862 SMART serkin_6 507 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g01580 862 MobiDBLite consensus disorder prediction 314 344 - -
Bva09g01580 862 Pfam Protein tyrosine and serine/threonine kinase 512 762 IPR001245 GO:0004672|GO:0006468
Bva09g01580 862 ProSiteProfiles U-box domain profile. 792 862 IPR003613 GO:0004842|GO:0016567
Bva09g01580 862 MobiDBLite consensus disorder prediction 211 239 - -
Bva09g01580 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 862 IPR013083 -
Bva09g01580 862 SUPERFAMILY Protein kinase-like (PK-like) 489 762 IPR011009 -
Bva09g01580 862 MobiDBLite consensus disorder prediction 207 239 - -
Bva09g01580 862 Gene3D HUPs 31 170 IPR014729 -
Bva09g01580 862 Gene3D Phosphorylase Kinase; domain 1 485 579 - -
Bva09g01580 862 ProSitePatterns Protein kinases ATP-binding region signature. 513 534 IPR017441 GO:0005524
Bva09g01580 862 Coils Coil 440 460 - -
Bva09g01580 862 CDD RING-Ubox_WDSUB1_like 797 837 - -
Bva09g01580 862 ProSiteProfiles Protein kinase domain profile. 507 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01580 Bva-Chr9 9583500 9589605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01580 40 860 U-box Gene Family AT4G25160 50.604 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Bva09g01580 PK_Tyr_Ser-Thr 2.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01580 - - gsj:114409387 1083.17