Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01443 ATGAGTCCACCAGCAGAGGTGAAGATGGAAGAAGGAAAGCCTTCAGTGGGGTCAGCGAACAGTTCACAGGCTGATGAGGAACGTGGGGACCCTACCGAGTCTAGATTCACTGAATTCTGCAAGAATGGACTACCGTTGGATGAAGAAAGTTTTAAACGAGCAAGGAAACTGTTCAGAGAAACCAAATCCGTTCTACTGGCAAATATCTCTTCTATTGGGAATGGGACGTCTGAAGAAGCAGAACGGTATTGGTTTTCATTTGTTCTATACTTGGTCAAGAGGTTGGCTGAGAAGAACACAGACGGAGAAAAGGAAGAGACTGATAACAACAGGCTTACCTTTTGCCAAATGTTGAGAGCGGCAAAGCTTAACATCtcagatttttttaaagaactTCATCAGTTTGTTGATAAGGCTGGCTCAATTATAAGTAATTCATATGGCACCGATTGGGAAAACAGGCTTAAGGCGAAGGAGTTGCAGGCCAATATTTATCACTTGCGCATTCTTAGCAGTAAATATAAACGTGCATTTGGGGATTTATTCTTGACTACTGATGCAAATGTTGAGAAGCAGTCAGCTGTTCCCAGAGCCACTGATTATGTATCCGAATGCCATCGTTTTGGATGGCTACTCTTCTTGGCACTTCGTGTACATGCTTTCAGCCGTTTTAAAGACTTGGTGACATGCACCACTGGTTTAGTTTCTATATTGGCTATCTTGATCATTCATGTTCCTGTTCAGTTTCggaattttaacattaatgACTCTTCACGCTTTGTCAAAAGAAGTAACAGAGGTGTGGACCTCATTGCATCTCTTTGCCAAATTTATGAAACTCCAGAAGATGAATTGAGGAAAACAATAGAGAAGACGAACCAATTAATCTCTGATATATTGAAGAAGAAGCCTTGTTTGGCATCTGAATGTGAAACTGAGAACCTAAGGAATATTGATAGAGAtggtttgatttattttagagATCTAATGGAGGAAACATGTCTGCAATCTAATTTGGATATCTTAGAAAAAGATTATGATAATGCACTTCATGACAAGGGTGAACTGGATGAGAGATTATTCATTAATGAGGATGATAGCTTATTAGTTTCAGGAAGCTCATCCGGAGGTTCTATGTCTATAAATGGTGTTAAGAGGAAATTTGATTCACTGGCGTCCCCTACAAAGACAATTACAAGCCCACTCTCTCCCCACCGCTCTCCTGTATCTCATGCAAATGGCATCATGGCTAGTGCAAATTCAAAGATGGCAGCCACCCCTATTAGCACTGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATATCTCCACTTCCATCAAAGCCCTCACAAGAGCTGGAGAGATTCTTCACATCATGTGATAGGGATGTTACTGGTGATGTGGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTGGGAGAACGGTGTGCAACTGTAAGCCTGCAAACTGCAAACCTCATGGACAATGTCTGGGCAGAGCAGCGAAGACTGGAAGCCCTGAAGTTATATTACAGGGTCTTGGAAGCAATGTGTAGAGCAGAAGCCCAGAAACATGCAACTAATTTAACCTCATTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCATGTTCTGCAGAATTGGTCCTGGCAACACATAAAACTGTAACAATGTTGTTTCCTGCAGTATTGGAGAGGACTGGAATCACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTTATAAGACATGAGGATTCTCTCCCGAGGGAATTAAGGCGGCATCTGAATTCATTGGAAGAACGACTTCTGGAGAGCATGGTATGGGAAAAGGGTTCTTCGATGTATAATTCTTTGACAGTTGCAAGACCTGCTCTTTCTGCAGAAATAAATCGTCTTGGATTGTTAGCTGAACCAATGCCATCACTGGATGCAATTGCAATGCATATTAACTTCTCCTGTGGAGGGTTGCCCCCTGTGCCTTCCTTGCAGAAGCTTGAAAATTCCCCAAGTAAGAATGGGGATACAAGGTCTCCAAAGCGACCCTGCACTGAATATCGAAATGTGCTGGCAGAACGGAATTCCTTTACCTCACCAGTGAAGGATCGGCTTCTGCCCTTCAGTAATGTTAAGTCAAAGCTACCCCCTCCGCCTTTGCAGTCAGCCTTTGCAAGTCCTACAAGACCAAATCCAGGAGGTGGAGGGGAAACTTGTGCTGAAACTggtatcaatattttttttgggaagATCGTTAAGTTGGCAGCAGTCCGAGTAAGTGGCATGGTTGAAAGGCTGCAATTGTCTCAACAGATAAGGGAGAATGTCTACTGTCTTTTCCAACAAATCTTAAATCAACGGACATCTCTCTTCTTTAACCGTCATATTGACCAAATCATCCTCTGTTGTTTCTATGGAGTTGCAAAGATTTCTCAACTGAGCCTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCGCAATGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATCCGCACGACGTAATGGGAGAACAGGGCTGGAGCATGTTGATATCATCACATTttacaatgaaatatttattccCTCTGTGAAGCCTCTGCTTGTTGAGCTTGGCCCTGGGGGGACAACTACGAGATGCAACCGGTCACCTGAAGTCAACAATAAAAACGATGGGCATGTAGCTCAGTGTCCTGGATCTCCTAAAATATCTCCTTTTCCAAGCCTTCCTGATATGTCACCCAAAAAAGTTTCTGCTGTACATAATGTGTATGTCTCTCCATTGCGGTCATCTAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTATGCCTGCGTTGGAGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATAGCAACAGAAAGGTCAGAGGACCCCtcaactttgatgatgttGATGTTGGCTTGGTCAGTGACTCTATGGTGGCAAACAGCCTTTATCTTCAGAATGGCAGTTGTGCATCATCATCAGGTCCACCATTGAAGTCTGAGCAACCTGACTCTTG 3098 0.417 MSPPAEVKMEEGKPSVGSANSSQADEERGDPTESRFTEFCKNGLPLDEESFKRARKLFRETKSVLLANISSIGNGTSEEAERYWFSFVLYLVKRLAEKNTDGEKEETDNNRLTFCQMLRAAKLNISDFFKELHQFVDKAGSIISNSYGTDWENRLKAKELQANIYHLRILSSKYKRAFGDLFLTTDANVEKQSAVPRATDYVSECHRFGWLLFLALRVHAFSRFKDLVTCTTGLVSILAILIIHVPVQFRNFNINDSSRFVKRSNRGVDLIASLCQIYETPEDELRKTIEKTNQLISDILKKKPCLASECETENLRNIDRDGLIYFRDLMEETCLQSNLDILEKDYDNALHDKGELDERLFINEDDSLLVSGSSSGGSMSINGVKRKFDSLASPTKTITSPLSPHRSPVSHANGIMASANSKMAATPISTAMTTAKWLRTVISPLPSKPSQELERFFTSCDRDVTGDVVRRAQIILQAIFPSSPLGERCATVSLQTANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQKHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLGLLAEPMPSLDAIAMHINFSCGGLPPVPSLQKLENSPSKNGDTRSPKRPCTEYRNVLAERNSFTSPVKDRLLPFSNVKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRVSGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGRTGLEHVDIITFYNEIFIPSVKPLLVELGPGGTTTRCNRSPEVNNKNDGHVAQCPGSPKISPFPSLPDMSPKKVSAVHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGPPLKSEQPDS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01443 1032 Pfam Retinoblastoma-associated protein A domain 426 626 IPR002720 GO:0005634|GO:0051726
Bva09g01443 1032 MobiDBLite consensus disorder prediction 670 690 - -
Bva09g01443 1032 SMART RB_A_2 426 626 IPR002720 GO:0005634|GO:0051726
Bva09g01443 1032 Coils Coil 339 359 - -
Bva09g01443 1032 Pfam Retinoblastoma-associated protein B domain 750 877 IPR002719 GO:0005634|GO:0051726
Bva09g01443 1032 Gene3D - 205 363 - -
Bva09g01443 1032 Gene3D - 701 902 - -
Bva09g01443 1032 SMART DUF3452_2 95 244 IPR024599 -
Bva09g01443 1032 PANTHER BNACNNG22930D PROTEIN 27 1019 - -
Bva09g01443 1032 SUPERFAMILY Cyclin-like 748 920 IPR036915 -
Bva09g01443 1032 MobiDBLite consensus disorder prediction 1 38 - -
Bva09g01443 1032 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 27 1019 IPR028309 GO:0006357|GO:0051726
Bva09g01443 1032 SUPERFAMILY Cyclin-like 434 628 IPR036915 -
Bva09g01443 1032 Gene3D - 429 616 - -
Bva09g01443 1032 Pfam Domain of unknown function (DUF3452) 106 244 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01443 Bva-Chr9 8080123 8088238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01443 9 1032 Core Cell Cycle Gene Families AT3G12280 69.826 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Bva09g01443 RB_A 2e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01443 K04681 - gmx:100779266 1667.51