Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01409 atGCTTGAAGCTTCTCCAATGGACGAATCCTTCTCCGACCACAAGCTTTGCGGTTTCCTATGCGCGGTTCTTGCAATTACTCCGAACCAATGCGGTCCTTGTCCAGATATAGGTTTCAAGGAGCGGTGCAACATCTTTGGAGATGGTTCCAAGTTCGGGTTTCGGTCTGAAAGCGGTGTTGTGTTAGCTCCGGTGGACTTGGTGTTGAATCTGATTGAAAATGGGGATGTGTGTCCTTCTAATTCAGAACAATGCAAGGTTGTGGAGGGGGAGTCTAAGGTTAAATCCAATTGTAATGGCGAGGTTACGCCTCAGAAATCGGTAATGAATGGATTTGTGAGGAGGAAAAGTGATGGGGACCATGGGGTGAGTGAAAGTGGGAGCTTGAGGAAGAGGAGTCTGAGGAAGATTGGGATGGTGAATGGGAGTATTAGTGTGGTTAATCAGCTTCACGCCCTGGTTAGCCGCAAGTGCTTGAAGATTGATGCTTGTGTGCTTTGGGTTGAGCTTGGTGGTTGTGGGGAGGCCCGGGCGGTGGTACTGGTTGATGTGTACCTTCCTGTTGCACTGTGGAGTGGCTGGCAGTTTCCGAGATCTGCATCGATTGCTGGTGTACTTTTTGGGCATTTGAGCTGCAATTGGGGTGAGAGAAGTTCAATGCTTTCATGTTCAGACTATTCTAGGAAGATTCTTGGAGATAATGATAGCATTTGGAACCTTTCTGATTGTCATGTCCTTGGTTGCAAGCTCCATCACCTTGCGAGTGATTCTTCAAAGAAAAGGTTGTTTGAActacatgaaatttttaagaagGTACCTAGTGTAGGAAAGCAACAGAAGTCTGATAGTTGCAGGATAATGCCCATGGACGAGTCTCACAGATCTGGGATTTGGGACATATCTGATGACATTTTAACTAGAATTATAGCTTCTCTTGCACCAGTGGACCTCACTAGGATTGCTGCAACTTGTTGCCATTTAAGATCCTTGGCTGCTTCTGTAATGCCTTGTGCAAAGTTAAGACTGTTTCCCCATCAGCAGGCTGCAGTTGAGTGGATGTTGCATCGAGAGAGAAATGCTAAAGCATTGCCTCATCCTTTATATGTTGCTCTCTCAACTGAGGATGGCTTCAGTTTACATGTAAATACTGTATCTGGTGAAATCGTCACCGGGGAAGCTCCCACAATTGAAGATTTTCGAGGAGGAATGTTCTGTGATGAACCTGGCTTGGGTAAGACCGTAACTTTGCTTTCTCTTATTCTGAAGACCCAAGGTACACTGGCAGACCCACCAGATGGGGCACAAGTAACTTGGTGTCAGCATAATGGTGATCAGAAATGTGGCTATTATGAGCTTAGTGGTAACAGCAGCTCTGGTAGTTGCATGTTGGGGAAGAGGGATGTATGGGAGGATgattgtaaaaataaagagaatgaTAACTACTCCTCAAAAAGAGCCAAGGTGATGGTTACTGACAAGCATATTACTGCTTTTCATTATTCATGTGCcagcaaagaaaagagatcaCCTTTGGGTGCATGCTCTGAGCAACATATGCCTGCAAGTCGATGCTCTAGGAGCTTGAGTCGGATAAAACAAGATCTACATCTCTCCTATGAGCAGGGAGCTTTCTTTTCCAATGAAAAAAAGGTTGGTGAAAACTCAAGCAAAACAAAGCATGCATCAGATGCTGTATCCCATGTATCTCAAAACAAGCTAGTTGATACCTCATATGGACATGGAAAGGGCAGGAGTGCTAGGCAGCCTGCAACAGATAGTGTTGAATCTAATGATACCTGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTACAGATACCAATACAGCTAATATTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTTTGTATCAGAGTTGTTGTATACCCGAACAATCTTGGCAGAATGGCTGTCAAATAACTAACTTACAAGGATTTCACTTGAAAGGAACTGCTGGTGGTCAGAAAcaaaatgtttcatttttcactGGTATACTTAAGGAGCAGTATGCATTGAAGAATtctcaaacaaagaaagccCTTACTTGGTTAGCTGGGCTTTCTGCAGAGAAACTTGTGTATATGGAAACAATTGGCTTACGGGGTCCTATTTTAGGTACCTACAATATGTCCAGTGAATGTGCATTCCACAAAATATTTCAAGCATTTGGCCTCATAAAAAGAGTAGAGGAAGGCGTATGCAGGTGGTACTACCCTCCAAATCTTAATAATTTGGCCTTTGATGTGTCTGCCCTTAGAATTGCTCTCTGTGAGCCGTTAGATTTTGTTAGGCTATACTTGTCAAGAGCAACCCTAGTAGTTGTTCCTTCAAACTTGGTTGATCACTGGAAAACACAAATTGAAAAGCATGTCAAACATGGTCAATTGAGAGTTTATGTTTGGGTTGATCATCGAAAGCCGTCTGCACATAATCTGGCTTGGGACTATGATGTTGTCATTACTACATTTAGTCGTTTGAGTGCAGAGTGGAACCCGCATAAGAGAAGTGTTCTGATGCAAGTACATTGGCTCAGGATCGTTTTGGATGAAGGGCACACTCTTGGCTCAAGTGTTAGCTTGACAAACAAGTTGCAAATGGCAATTTCATTGATGGCATCAAATCGTTGGATATTAACAGGAACACCAACACCTAACACTCCTAACAGTCAACTATCACATCTGCAACCACTGCTAAAGTTTCTTCATGAAGAAGCTTATGGACAGAATCAGAAGTCGTGGGAAGCTGGCATTCTTAAGCCATTTGATGCTGAGATGGAGGAAGGAAGGTCTCGTCTATTACATTTACTTGAAAAATGCATGATTAGTGCAAGAAAGATAGATCTGCAAAATATTCCACCATGCATCAAGAAAATTGTTCTTCTAGATTTTACTGAGGATCATGCCAGAAGTTACAATGAATTGGTACTCACAGTTAGGAGGAATATATTATTGGCTGACTGGAATGATCCTTCACATGTTGAGAGTTTACTAAATCGAAAACAGTGGAAAACCCGGAGCACAACTATTAAAAATGTTAGGCTCTCTTGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGTGAAGATATTCAAGAAACAATGGATATGTTAGTAGAAAGTGGTTTGGGTCCTGTTTCTGGAGAGTATAATACTATAAgatataatcttatttttggtGGCTACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTTTCATTACACCTTGCCGGCATCTGCTGTGCCTTGATTGTGTGTCTTTAGACAGTACAAAGTGTACTTTTCCTGGCTGTGGTAATTTATATGAGATGCAGAGTCCTGATACACTAGCCCGCCCTGAAAATCCCAATCCAAAGTGGCCTGTACCCAAAGATCTGATTGAGCTACAACCTTCATATAAACAGGATAATTGGGATCCTGATTGGCAATCAACTTCTAGTAGTAAAGTTTCATATCTTGTACAGAAATTGAAAGCTTTGCAGGAAACCAATAAAGAGAGGGGTTATTACCATATAGATAATGGCAATGATCAATATCATGCTGAGAAGAGTTGCCCTTTGCAGACGAGAGATACTGAATCATCACACCAGGAATACCACATAATCAGCACCAAAACAAATATGGCCCCAGAgaaagttttgatattttctcagTTTCTTGAGCATATACATGTCATTGAACAGCAGttGACTTTTGCCGGTATCAAGTATGCTGGGATGTATAGCCCTATGCATTCTAGTATCAAGAAGAAGGCACTAGCCACATTCCAGCATAATTCAAGTTGTTTGGCACTCGTGATGGATGGAAGTGCTGCATTGGGTCTTGACCTGAGTTTTGTCACACACGTATTTCTAATGGAACCTATCTGGGACAGAAGCATGGAGGAACAAGTAATTAGTCGTGCTCATCGCATGGGTGCTTCTCGTCCTGTTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAatgctaaaatttttacaGAATGCTGATAAATGTAGAGGGTTCCCAAGTAAAGATGTCAAATCTGAAGATGAGGGGGGACGAGGATATCGTTCATTGCATGATTTTGCCGAAAGCAGTTATCTGCAGGAACTTAGATCTTTTCTCACTAACCCTGAACTTATAGAAGgagctta 4181 0.4119 MLEASPMDESFSDHKLCGFLCAVLAITPNQCGPCPDIGFKERCNIFGDGSKFGFRSESGVVLAPVDLVLNLIENGDVCPSNSEQCKVVEGESKVKSNCNGEVTPQKSVMNGFVRRKSDGDHGVSESGSLRKRSLRKIGMVNGSISVVNQLHALVSRKCLKIDACVLWVELGGCGEARAVVLVDVYLPVALWSGWQFPRSASIAGVLFGHLSCNWGERSSMLSCSDYSRKILGDNDSIWNLSDCHVLGCKLHHLASDSSKKRLFELHEIFKKVPSVGKQQKSDSCRIMPMDESHRSGIWDISDDILTRIIASLAPVDLTRIAATCCHLRSLAASVMPCAKLRLFPHQQAAVEWMLHRERNAKALPHPLYVALSTEDGFSLHVNTVSGEIVTGEAPTIEDFRGGMFCDEPGLGKTVTLLSLILKTQGTLADPPDGAQVTWCQHNGDQKCGYYELSGNSSSGSCMLGKRDVWEDDCKNKENDNYSSKRAKVMVTDKHITAFHYSCASKEKRSPLGACSEQHMPASRCSRSLSRIKQDLHLSYEQGAFFSNEKKVGENSSKTKHASDAVSHVSQNKLVDTSYGHGKGRSARQPATDSVESNDTWIQCDACHKWRKLTDTNTANISAAWFCSMNTDPLYQSCCIPEQSWQNGCQITNLQGFHLKGTAGGQKQNVSFFTGILKEQYALKNSQTKKALTWLAGLSAEKLVYMETIGLRGPILGTYNMSSECAFHKIFQAFGLIKRVEEGVCRWYYPPNLNNLAFDVSALRIALCEPLDFVRLYLSRATLVVVPSNLVDHWKTQIEKHVKHGQLRVYVWVDHRKPSAHNLAWDYDVVITTFSRLSAEWNPHKRSVLMQVHWLRIVLDEGHTLGSSVSLTNKLQMAISLMASNRWILTGTPTPNTPNSQLSHLQPLLKFLHEEAYGQNQKSWEAGILKPFDAEMEEGRSRLLHLLEKCMISARKIDLQNIPPCIKKIVLLDFTEDHARSYNELVLTVRRNILLADWNDPSHVESLLNRKQWKTRSTTIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLGPVSGEYNTIRYNLIFGGYCVRCKEWCRLPFITPCRHLLCLDCVSLDSTKCTFPGCGNLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQKLKALQETNKERGYYHIDNGNDQYHAEKSCPLQTRDTESSHQEYHIISTKTNMAPEKVLIFSQFLEHIHVIEQQLTFAGIKYAGMYSPMHSSIKKKALATFQHNSSCLALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPVHVETLAMRGTIEEQMLKFLQNADKCRGFPSKDVKSEDEGGRGYRSLHDFAESSYLQELRSFLTNPELIEGA 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01409 1393 SUPERFAMILY F-box domain 290 333 IPR036047 GO:0005515
Bva09g01409 1393 CDD SF2_C_SNF 1211 1327 - -
Bva09g01409 1393 Gene3D - 1117 1360 IPR027417 -
Bva09g01409 1393 CDD DEXDc_SHPRH-like 774 951 - -
Bva09g01409 1393 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 125 1374 - -
Bva09g01409 1393 PANTHER OS01G0952200 PROTEIN 125 1374 - -
Bva09g01409 1393 SMART helicmild6 1235 1317 IPR001650 -
Bva09g01409 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 423 IPR027417 -
Bva09g01409 1393 ProSitePatterns Zinc finger RING-type signature. 1088 1097 IPR017907 -
Bva09g01409 1393 Gene3D - 764 954 IPR038718 -
Bva09g01409 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 950 IPR027417 -
Bva09g01409 1393 Pfam Helicase conserved C-terminal domain 1216 1317 IPR001650 -
Bva09g01409 1393 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1205 1361 IPR001650 -
Bva09g01409 1393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 910 IPR014001 -
Bva09g01409 1393 ProSiteProfiles Zinc finger CW-type profile. 594 645 IPR011124 GO:0008270
Bva09g01409 1393 Pfam CW-type Zinc Finger 599 642 IPR011124 GO:0008270
Bva09g01409 1393 Pfam SNF2-related domain 345 1008 IPR000330 GO:0005524|GO:0140658
Bva09g01409 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1344 IPR027417 -
Bva09g01409 1393 SMART ultradead3 338 921 IPR014001 -
Bva09g01409 1393 CDD RING-HC 1073 1097 - -
Bva09g01409 1393 Gene3D - 584 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01409 Bva-Chr9 7830935 7838309 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01409 780 1337 RAD5 or RAD16-like Gene Family AT5G22750 25.170 2.97e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva09g01409 SNF2_N 6.9e-100 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01409 - - adu:107471940 1966.43