Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01336 ATGGGTCGGGGAAAGATTGAAATCAAAAGGATAGAGAATGCAAATAACAGGCAAGTTACATTCTCTAAGAGGCGAACTGGGTTGCTTAAAAAGGCACAGGAATTGGCTATTCTATGTGATGCTGAGGTTGCTGTGATCATCTTCTCCAATACGGGCAAGCTCTTTGAGTTTTCAAGTTCTGGTATGAAGCGAACACTGTCAAGATACAACAAATGCCTAGAATCCCCAGAGGCCGCTTTAGCGGAATATAAGACAGAGAAGGAAGAGTCTAAGGCAGTGGAAATTCTCAAAGATGAAATTGCAAAGCTAGAAACAAAGCAGTTACAGTTGATGGGTAAGGACCTCACAGGCTTGGGCTTAAAAGAGTTGCAACATCTAGAGCAGCAACTCAGTGAAGGGTTATTGTCAGTCAAGGAGAGGAAGGAGGAAGTAATTATGGAGCAATTAGAGCAGTCTAGAATTCAGGAACAAAGAGCCATGTTGGAGAATGAAACCTTGCGCAGACAGGTTGAGGAGCTTCGTTGTTTGTTCCCTCTAACAGAACATATGGTTCCATCTTACCTTGAAAACCAACatatggaaagaaagaaagcctTGGTAAATAATGGGGTCGCATGTCCTAACTTGGCCAGTAATCCTTCAAGTGAGAAAGATTCAGACACCACACTGCATTTAGGGTTACCGATCGATGTCCAGCACAAGAGGAAGGCACCTGAGAGAGAAACCTTTTCCAAAAACTGTCCAATGGCTCTACTCTG 758 0.4235 MGRGKIEIKRIENANNRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLESPEAALAEYKTEKEESKAVEILKDEIAKLETKQLQLMGKDLTGLGLKELQHLEQQLSEGLLSVKERKEEVIMEQLEQSRIQEQRAMLENETLRRQVEELRCLFPLTEHMVPSYLENQHMERKKALVNNGVACPNLASNPSSEKDSDTTLHLGLPIDVQHKRKAPERETFSKNCPMALL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01336 252 Coils Coil 149 176 - -
Bva09g01336 252 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bva09g01336 252 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bva09g01336 252 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 231 - -
Bva09g01336 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 Coils Coil 86 113 - -
Bva09g01336 252 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g01336 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bva09g01336 252 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva09g01336 252 PANTHER MADS BOX PROTEIN 1 231 - -
Bva09g01336 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva09g01336 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01336 Bva-Chr9 7291696 7295527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01336 1 246 MADS-box Gene Family AT5G13790 57.085 2.14e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva09g01336 K-box 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01336 - - zju:107417456 363.229