Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01303 ATGAAGAGATTGAGGTCTAGCGACGATCTCCATTCGTACGGAGATAAAAATGTCTGCAAGGACTCGAATCTGAATCGGTCGTCGTCTTCTTCTCATCGGGAGTTTTACTACAAATCCGATAATGTACGGAAGGGTTTGCTCTCTTCGTCGTCTTCCTCGTCTCGGTATGATAGGGATCGAACGGTGAGTGATGATCGAGACAATACCAGGTTGGTTCGGAAGCGATCAGACCATGAATTTGAGGGCTTTGATCGGAGAAAAGGGTTTGACAGATACAGGGATGGCGGTGAAAGTAGAGGGTATGGTGGTGGAGGGGATAGGAATTTGATGCATAGGACTGAGAGTTTTGGTGGGTCGAGAAGGGAATTTCCAAAGGGCTTTCGGTCGGAGAGGGACCGGTCAAGGCGTGAGGGCAGTGTGTCATCATGGCGGAGATTTGCTGGGATGAAGGATTTTGATGACTCTGGTAGAGGCGGTAGGGTTGGATTGGAAGATAGAGGAGTACGGTCACCGAAGAGTTTGAGGGATGTAAAGTCCCCAACTTGGTCAAAGGATTCTGAAAGTGAGCAATCTAAGATGAGGTCTCCACCAAGAGGGTGGAGAGATTCTAAGTCCAAGTCCAAGTCACCAACTTGGTCCAAGGATTCAGAGAGTGAGCAATCAAAGAGTGAACAATCGAAAAGTGCTGAGGTGAAGAAAACCGAGGAGGTGCAAGTTGAGAGTGGGAGTAGTAGTGAAATGGAGGAAGGGGAACTTGAACCTGAACCCATGGCTGAAGCTGAACCAGACACTGCTCCTAAAGACTCACCTGCAAATGAAGACTGCGCTTCTACCCGTTTGGATACTGATGAAAAGGAAGCTCTGAATGAATGCCACTTCAATGATACAGGTACTAATGTGGAGGAAACATTAGATTTATCAGATAAGCAACAGATAGAAGCAAATGAGGGTTCCAGTTCTGGTGGGAAAGATGCAGTGAAAGAAGTTGATATGCAGCCAGTGCCAGATATGCAGATTGATCCAGCTGATAAAATACACATGGCTGataatgaaattgaaactGTAGCTCATGGTGATGACAAGGAAAAACAATCTTTTACGGCTGATATTGAATGTGAGGAGGAAACACTAAAGGTTGCAGATGTGGAGAAGCCTTTATTGGAGGAAACACCAAAGGACGCAGATGTGGAGAAGCCTTTGTTTAATGAAGAGGAGCATGAACAAGACAAGGATGTAGATCTTGAAACCAGGGCAGTTGTTGACAATCCGGAGATCCAAGACCACCTTGTAGgttcaacagaaaaagaagtgTCTGAAGTACATAGAGAAATGATAGAGTGTCTGCCCAGTAATGCAAAGGAAAAGGGTAAAAATGTCTCTGTCACGCCTACTGATGTTGTTCATTCTTTAGAGGATGGTCTATTGATAGATGGAGGATTGAGAGATATTACAACTTGCTCGGATGATGCTATGGAAGGTCCAAGCACAAGGGGGTTTGAATTGTTTTCCAGATCTCCTGTTAGGAAAGCAGAGAAAATGGGTCAATCCAATCTCAAGAAACATAAGGGTGGAAGTCTTGAAATGGAGCAGCTTGATCTATCACTTAGCTtgccaaattttttattaccaaTTGGTGCTCATGAGACAACACAAGTCCCCGGATCCCCTAGTGAAACTCGGAGTGTACAGTCCTTAAGTAACACATTCCGTACTGACTCAGATGGATTTACTGCATCAATGTCATTTTCTGGTTCTCAATCATTTTATCACAATCCAAGCTGTTCTCTCACACAGAATTCAGTGGATTATGAACAATCTGTTGGCAGTCGCCCCTTATTTCAGAATATGGATCAACTTGCTCAAGGAGGTTGGCTAGGCCAGCCTCAAAATGATCTCAAACcgaaagaattttcttttggtcagAGAACTTCAGGGAATGGAAATGACTCTATTTACCAGCCTCAACCATCATGGGGCATTTTGGATGGTCAACCCATGAAAGGTCAACATTCCAGGGTTCTAGAAGGGAGCTCAAAAATGGCCAATGGAGTTGACAGGCAATTAAGTTTTCATAAACAGTTGTCAGGTCAGTCAAGGCGCCATGATGATGTTAGATCTCCTTCGCAGAGTGTTGGGTCTCATGATATTGGATCAAGTTATAGTTTTGACAAGAGGGAAATGAGAGACAGGAGTAGTGGTAGGTTATATCGAACTACTAGCCAGAAGGAACAAGAGCAATTTCTGATGAGTGGTACTGATTTTGTTGAGACGATCATTGCAAGAATAGTTTATGATCCGCTGCAtgcaatgacaaaaaaatttcatgaaatgaCCGGACAATCTACTGCCCATTTGAAAGAAGGCATTCATGATATCTTGCTCAATGCAGACAAACAAGGTCAAGTACATACTTTTCAGAAAGTCCTGCAGAACAGATCTGATATAACCTTGGAGGTTCTTCTAAAGTCCCATCGAGTTTTATTGGAAATTTTGGTTGCTTTGAAAACTGGATTAACCAATTTTCTTCGCCTGGACAACAGCATCTCATCTTCTGATTTAGCTGAGATTTTTCTGAACTTAAGATGTAGGAATCTTACATGTATAAGTCAGTTGCCTGTAGATGAATGTGATTGCAAGGTTTGTGTGCTGAAGAATGGTTTTTGTAGGGAATGTATGTGTCTTGTGTGCTCTAAGTTTGACATGGCATCAAATACATGTAGTTGGGTGGGGTGTGATGTTTGTCTACATTGGTGCCATGCTGACTGTGGACTGCGGGAATCATATATTAGGAATGGACATAGTGCTACTGGGGCACAAGGGACAACTGAGATGCAGTTTCACTGTATTGCCTGTGATCATCCCTCTGAGATGTTTGGCTTTGTCAAGGAggttttccaaaattttgcaaaagaaTGGTCAGTTGAAGCATTTCGCAAGGAGCTTGAATATGTGAAGAGAATATTTTCTGCCAGCAAGGACATGAGAGGGAGACAGTTGCATGAGATTGCTGATCAAATGCTGTCAAGGTTGGCAAACAAGTCTAATCTTCCAGACGTTTACAGCCACATCATGTCTTTCCTTGCGGATGGTAATTCTTCCAAATTAGCCATGACACTGACCTCTGGGAAGGAGCaagttaaagaaaacaaagtggTAACTGGGCCCATCCAGGAAGCTCAATGGTTGAAATCTGTTTGTTTGGAAAAGCCAACTCCGTTAGAAAGGCCATTAAGCATGCTTCCTAGCTATGAAAGAAATGACAAAAGAGTTCAGATGCAAGACTTGCAGATGAGTGTCCCAAAggacttttattttgatgaattgGAGAGTctagtaaaaattaaacaggCAGAGGCTAAAATGTTTCAAGCACGTGCCGATGATGCAAGAAGAGAAGCTGAAGGGCTGAAACGCATTGCCCTtgcaaagaatgaaaaaattgaagaagagTATACAAATAGAATAGCAAAGTTGCGAATGGGGGAGGCTGAGGACATGCGTAAACAAAAGCTTGAAGAACTAAAGGTGTTAGAACGAGCACATATGGAGTACTTCAACATGAAAATGAGAATGGAATCAGATATTAAAGATCTCTTGTCGAAAATGGAAGCTACGAAAAGGAGCCTTGCCATGTG 3635 0.4105 MKRLRSSDDLHSYGDKNVCKDSNLNRSSSSSHREFYYKSDNVRKGLLSSSSSSSRYDRDRTVSDDRDNTRLVRKRSDHEFEGFDRRKGFDRYRDGGESRGYGGGGDRNLMHRTESFGGSRREFPKGFRSERDRSRREGSVSSWRRFAGMKDFDDSGRGGRVGLEDRGVRSPKSLRDVKSPTWSKDSESEQSKMRSPPRGWRDSKSKSKSPTWSKDSESEQSKSEQSKSAEVKKTEEVQVESGSSSEMEEGELEPEPMAEAEPDTAPKDSPANEDCASTRLDTDEKEALNECHFNDTGTNVEETLDLSDKQQIEANEGSSSGGKDAVKEVDMQPVPDMQIDPADKIHMADNEIETVAHGDDKEKQSFTADIECEEETLKVADVEKPLLEETPKDADVEKPLFNEEEHEQDKDVDLETRAVVDNPEIQDHLVGSTEKEVSEVHREMIECLPSNAKEKGKNVSVTPTDVVHSLEDGLLIDGGLRDITTCSDDAMEGPSTRGFELFSRSPVRKAEKMGQSNLKKHKGGSLEMEQLDLSLSLPNFLLPIGAHETTQVPGSPSETRSVQSLSNTFRTDSDGFTASMSFSGSQSFYHNPSCSLTQNSVDYEQSVGSRPLFQNMDQLAQGGWLGQPQNDLKPKEFSFGQRTSGNGNDSIYQPQPSWGILDGQPMKGQHSRVLEGSSKMANGVDRQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSSYSFDKREMRDRSSGRLYRTTSQKEQEQFLMSGTDFVETIIARIVYDPLHAMTKKFHEMTGQSTAHLKEGIHDILLNADKQGQVHTFQKVLQNRSDITLEVLLKSHRVLLEILVALKTGLTNFLRLDNSISSSDLAEIFLNLRCRNLTCISQLPVDECDCKVCVLKNGFCRECMCLVCSKFDMASNTCSWVGCDVCLHWCHADCGLRESYIRNGHSATGAQGTTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVEAFRKELEYVKRIFSASKDMRGRQLHEIADQMLSRLANKSNLPDVYSHIMSFLADGNSSKLAMTLTSGKEQVKENKVVTGPIQEAQWLKSVCLEKPTPLERPLSMLPSYERNDKRVQMQDLQMSVPKDFYFDELESLVKIKQAEAKMFQARADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRMGEAEDMRKQKLEELKVLERAHMEYFNMKMRMESDIKDLLSKMEATKRSLAM 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01303 1211 Coils Coil 1112 1150 - -
Bva09g01303 1211 Pfam Coiled-coil region of Oberon 1083 1199 IPR032535 -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 18 35 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 1 16 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 147 239 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 113 140 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 719 736 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 57 97 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 381 410 - -
Bva09g01303 1211 CDD PHD_OBE1_like 892 951 - -
Bva09g01303 1211 Pfam PHD - plant homeodomain finger protein 862 985 IPR032881 -
Bva09g01303 1211 Coils Coil 1160 1180 - -
Bva09g01303 1211 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1211 IPR004082 -
Bva09g01303 1211 Coils Coil 1188 1208 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 277 291 - -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 827 842 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1145 1167 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 773 795 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 899 919 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 972 991 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 853 874 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1106 1126 IPR004082 -
Bva09g01303 1211 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 812 827 IPR004082 -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 1 337 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 693 738 - -
Bva09g01303 1211 MobiDBLite consensus disorder prediction 292 318 - -
Bva09g01303 1211 PANTHER PROTEIN OBERON 4 1 1211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01303 Bva-Chr9 7075267 7080298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01303 862 1010 PHD Gene Family AT5G57380 25.503 5.89e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01303 - - gmx:100817003 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01303 09 7075267 7080298 Bva09g01303 09 7075267 7080298 ECH