Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01291 ATGCCTGACAAACCTGAAATTGAAGATTGGCGAGGAGAGCGAGGTGGGCAGATTCAGTTGCAGCCTGCAATTTACTCTCAGCCATGGTGGCGTGGAGTGGGGGAAGGTGCCTTCTTTGGTGATAGTGCTGCCAAACTATCTTCAACTGAATCCCACAGTGGTTCTATCTTAAATGGTGCCAAGCATTCAGAAGATAATGAAGGGCTACCTGTTggagttaattttaataagcAGGCTCAGCTCATAGCTTCAGAGAATGGAACTGGTGGGGATGTTGGCAAAGTGCACCAACACATTAAACATATTCAGTCCTCAGCAGCATTTACCGTGGGCAAACACCTGGACCCAAATTCCCAGAAGGAACTTATTGGTCATTCAATTGTCTTAACATCTTATCCTTATTCAGATGCACAGTATGGTGGAATCTTGACTACTTATGCACCTCCAACTTTGATAAGTCCTCATCTATATGGAATTAATCATTCTAGAATGCCTTTGCCGATTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCCAAACAGTATCATGGTATTCTTAGGCGAAGACAGTCACGGGCCAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGTTAGGAAGCCATATCTTCACGAATCTCGCCACCTACATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTCTCAATAAAAAGAAGCTTGACAGTAACAATTCCAATGTCAATTCAGAATGCAAGAATGCTGGTGCAAATCTCTCAACAATATCTGGGAGCTCAGCTGCCTCTGATCGTTTGCTTACTAACAGTGAGAATTTAGGCTCATCAAATGACCAGCTTGATGCATCAGCATCAATGGTTCAGAATCTTCAGATCGCGCACAAAGCACATGGCCTCTCCATTGGTTACAGTAATGGCAATGGTCTGTCATCAATGTACCACTCACCATTAGTAATGCTTTCCTCTGATTGGGTGGAGACAAAGGCCTTTCCTTCGCCCAGCTTGGAGGAAACAACCTTCTTGATGCAGTCCTCAGGCAATTCATTCTTGGCTCAGTTTTTTGACCTCTTACTTGATCCCCCCTCGCTTCCATTTCtctg 1097 0.4376 MPDKPEIEDWRGERGGQIQLQPAIYSQPWWRGVGEGAFFGDSAAKLSSTESHSGSILNGAKHSEDNEGLPVGVNFNKQAQLIASENGTGGDVGKVHQHIKHIQSSAAFTVGKHLDPNSQKELIGHSIVLTSYPYSDAQYGGILTTYAPPTLISPHLYGINHSRMPLPIEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHAMRRARGCGGRFLNKKKLDSNNSNVNSECKNAGANLSTISGSSAASDRLLTNSENLGSSNDQLDASASMVQNLQIAHKAHGLSIGYSNGNGLSSMYHSPLVMLSSDWVETKAFPSPSLEETTFLMQSSGNSFLAQFFDLLLDPPSLPFL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01291 365 Gene3D - 171 232 - -
Bva09g01291 365 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Bva09g01291 365 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Bva09g01291 365 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Bva09g01291 365 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Bva09g01291 365 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Bva09g01291 365 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 314 IPR001289 GO:0003700|GO:0006355
Bva09g01291 365 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 25 314 - -
Bva09g01291 365 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01291 Bva-Chr9 7003907 7007407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01291 21 236 CCAAT-HAP2 Transcription Factor Family AT5G12840 42.478 7.34e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Bva09g01291 CBFB_NFYA 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01291 K08064 - gmx:100782085 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01278 07 13543103 13546373 Bva09g01291 09 7003907 7007407 ECH
Bva09g01291 09 7003907 7007407 Bva09g01291 09 7003907 7007407 ECH