Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01288 ATGTGTGGTGGTCCAGATAAATCGAAATCTCCTTCAACTACATCTTCATCTGCTGTAGAAAACAGAGCTAACGGCGAAGACATGAAACATCTGACTGTTCTTACAGAAGATTCTTTTTCCAGTTTATTGGAACTTGCTTCTAACAATGACCTTCAAGGCTTTAAGCAAGTATTAGATAGCGATGCTTCCTCAATAAATGAAGTTGGGGTCTGGTATGGACGCCACAATGGCTCCAAACAAATCGTCCTTGAGCATAGAACTCCACTAATGGTGGCTGCTACCTATGGCAGTATTGATGTTCTGAAGCTTATACTCTCATGTCCAGAAGTTGATGTAAATTTATCCTGTGGGATGGATAAGAGCACTGCTCTTCACTGTGCTGCTTCTGGAGGGTCTTCTAATGCAGTTGATGCTGTGAAGCTTCTTTTATGGGCTGGTGCTGATCTTGATTCTGTGGACGCTAATGGAAATCGTCCTTTTGATGTTATTATTGGTCCTCCCAAACTGCCAGGCATGCGTGCGACTCTGGAGGAGCTTCTTTCATATAATTCGTCTGATGGTTCTGTCAGTGACTCTATTGCAATATCTGTTAATTCATCGAGTCCTGATTCAGCTCATCATTTTTCATCCTCTGAAAATGGGTTGCCCTCCTCTCCTTCTGGCTCACCACCTTCTCCAGCAGCTTTGAAGTTTACTGATATGCCTGTTGGTTCGACATCTGAGAAGAGAGAGTATCCAATTGATCCATCGCTTCCTGATATCAAAAATAGCATATATGCAACAGACGAGTTTCGTATGTTCTCATTCAAGGTCCGTCCATGTTCTCGGGCGTATTCACATGACTGGACTGAATGTCCATTTGTTCATCCTGGAGAGAATGCTCGCAGGAGGGATCCCAGAAAGTTTCATTACAGCTGTGTTCCATGCCCTGACTTCCGTAAGGGCGCTTGTAGACGCGGGGATATGTGTGAATATGCTCATGGAGTATTCGAATGCTGGCTACACCCAGCTCAGTATAGGACACGGCTCTGCAAAGATGGTACAAGCTGCAATAGGAGGGTGTGTTTCTTTGCACATACTGCTGAAGAGCTGCGTCCACTGTACATGTCTACTGGATCTGCTGTCCCTTCACCACGTTCATCAGCCTCTGCTAATGTGATGGACATGGCTGCTGCACTGAGCCTTTTGCCAGGTTCACCTTCATCAGTTTCCATGTCTCCTTCCCCATTTGCTCAGCCAATGTCTCCATCAGCATGTGGCATTTCCCACTCATCTGCACCTTGGCCACAACCGAACGTCCCAGCCATTCATCTACCAGGAAGCAACTTTCAATCTAGTCGCTTGAGATCTTCCTTTAGTGCTCGTGATATTCCCCCTGAGGACTTGAATGTGTTGCCAGATTTTGATGGCCAGCAACACCTTTTAAATGACTTGAGCTGTTACTTGCAGCCCCATCCTGGTGTTACCTCTGTGAGTCGATCTGGTCGGTCCAAGATACTAACTCCATCAAACCTTGAAGAGCTCTTTTCTGCTGAGATTTCTTCATCTCCCCGGTTTTCTGACCCAGCAATTTTTTCCCCTACACACAAATCAGCTGTCCTCAATCAGTTTCAGCAGCTTCAAACTAAGTTATCTCCCATAAATACTAATATCTTGTCCCCTAAGAACGTGGAACACCCTCTGTTACAAGCTTCATTTGGTGTCTCTTCTCCTGGGAGGATGTCTCCAAGAAGTGTAGACCCAATCTCTCCCATGAGTGCTCGTTCAGCTGCCTTTGCTCAGCGAGAGAAACAGCAGCAACAGTTGCGCAGCCTCAGTTCAAGGGACCTGGGTTCCAACAATCCTGCCTCAGTTGTAGGCTCCCCAGTAAACTCTTGGTCCAAGTTTGGATCTTCTAATGGAAAAGTTGATTGGGCAACCAACGGTGATGAACGAGGAAGATTGCCAATATCATCTTTTGAGCTTGGGAACAATGGAGAAGAGCCTGATCTATCATGGGTCCAATCCCTGGTCAAGGAATCCCCACCAGAGATGCTGAAAGAAAAGTTGGGTGCCTCTGGCCCCTTTGCATCTTCTGATGGACTGAATCCCAATTCTCAGATTGAATCCATTGATCATTCTGTGTTAGGAGCTTGGCTTGAGCAAATGCAGCTTGATCAGCTTGTAGTCTA 2171 0.4602 MCGGPDKSKSPSTTSSSAVENRANGEDMKHLTVLTEDSFSSLLELASNNDLQGFKQVLDSDASSINEVGVWYGRHNGSKQIVLEHRTPLMVAATYGSIDVLKLILSCPEVDVNLSCGMDKSTALHCAASGGSSNAVDAVKLLLWAGADLDSVDANGNRPFDVIIGPPKLPGMRATLEELLSYNSSDGSVSDSIAISVNSSSPDSAHHFSSSENGLPSSPSGSPPSPAALKFTDMPVGSTSEKREYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYMSTGSAVPSPRSSASANVMDMAAALSLLPGSPSSVSMSPSPFAQPMSPSACGISHSSAPWPQPNVPAIHLPGSNFQSSRLRSSFSARDIPPEDLNVLPDFDGQQHLLNDLSCYLQPHPGVTSVSRSGRSKILTPSNLEELFSAEISSSPRFSDPAIFSPTHKSAVLNQFQQLQTKLSPINTNILSPKNVEHPLLQASFGVSSPGRMSPRSVDPISPMSARSAAFAQREKQQQQLRSLSSRDLGSNNPASVVGSPVNSWSKFGSSNGKVDWATNGDERGRLPISSFELGNNGEEPDLSWVQSLVKESPPEMLKEKLGASGPFASSDGLNPNSQIESIDHSVLGAWLEQMQLDQLVV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01288 723 SMART c3hfinal6 338 361 IPR000571 GO:0046872
Bva09g01288 723 SMART c3hfinal6 303 329 IPR000571 GO:0046872
Bva09g01288 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 22 721 - -
Bva09g01288 723 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Bva09g01288 723 Gene3D - 303 366 - -
Bva09g01288 723 ProSiteProfiles Zinc finger C3H1-type profile. 308 330 IPR000571 GO:0046872
Bva09g01288 723 SUPERFAMILY Ankyrin repeat 35 162 IPR036770 -
Bva09g01288 723 SMART ANK_2a 84 114 IPR002110 GO:0005515
Bva09g01288 723 SMART ANK_2a 119 151 IPR002110 GO:0005515
Bva09g01288 723 SMART ANK_2a 37 67 IPR002110 GO:0005515
Bva09g01288 723 Pfam Ankyrin repeats (3 copies) 73 151 IPR002110 GO:0005515
Bva09g01288 723 MobiDBLite consensus disorder prediction 567 624 - -
Bva09g01288 723 MobiDBLite consensus disorder prediction 1 24 - -
Bva09g01288 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 328 IPR000571 GO:0046872
Bva09g01288 723 Gene3D - 6 165 IPR036770 -
Bva09g01288 723 PANTHER UNKEMPT FAMILY MEMBER 22 721 IPR045234 -
Bva09g01288 723 MobiDBLite consensus disorder prediction 204 233 - -
Bva09g01288 723 MobiDBLite consensus disorder prediction 204 218 - -
Bva09g01288 723 MobiDBLite consensus disorder prediction 7 22 - -
Bva09g01288 723 MobiDBLite consensus disorder prediction 592 624 - -
Bva09g01288 723 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01288 Bva-Chr9 6974592 6978339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01288 1 720 C2H2 Transcription Factor Family AT5G12850 53.514 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva09g01288 Ank_2 2.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01288 - - gmx:100792574 1068.91