Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01279 ATGAATGATGGGAGACCAATGGAAGTGCATTACATAGATACTGGCTTTCCATATACTGTTACTGAAAGCTTCATGGACTTCTTTGAAGGCCTAACTCATGTACCTGTAAATTATGCTCATGCTGAATCAATGCCTGATCAGGAAAGTGTCTATTGGTCAATGAATATGAACCCATATAAGTTTGGATTTTCTGGTCCTGGGAGCACTTCATATTATGGTTCTTATGAGTTAAACGATCATTTGCCAAGAATGGAGGTCAACAGGGTTGAGTGGGAATACCCTTCAGCTATGACCACTGAAGAGCCAGTTACATCAGACTCTCCTTCCAGAAGAGATGGAGATACGGGCATGCATACAATCCCTGAAGAATgCAGTCCAAATCACCAAGATTCCAGTACCTCCCAGGTTCAATGGCAGGACAATATTGATCCTGATAACATGACTTATGAGGAATTACTGGACTTGGGCGAGGCAGTTGGAACTCAAAGCCGAGGCCTTTCACAAGATCTTATTGATTTGCTTCCAACTTCGAAGTACAAATTTGGAGActtattcaaaagaaaaaactctGGGAAGAGGTGTGTGGTATGTCAGATGACATACCGAAGAGGTGACCGCCGAATGAAGTTGCCGTGCAGTCATGTTTACCATGGTGAATGCATCACGAAATGGCTGAGCATTAACAAGAAATGCCCAGTTTGCAACATCGAGGTATTTGGTGAAGAATCAACAAACTA 737 0.4152 MNDGRPMEVHYIDTGFPYTVTESFMDFFEGLTHVPVNYAHAESMPDQESVYWSMNMNPYKFGFSGPGSTSYYGSYELNDHLPRMEVNRVEWEYPSAMTTEEPVTSDSPSRRDGDTGMHTIPEECSPNHQDSSTSQVQWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQDLIDLLPTSKYKFGDLFKRKNSGKRCVVCQMTYRRGDRRMKLPCSHVYHGECITKWLSINKKCPVCNIEVFGEESTN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01279 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 244 - -
Bva09g01279 245 SMART ring_2 194 234 IPR001841 -
Bva09g01279 245 MobiDBLite consensus disorder prediction 122 137 - -
Bva09g01279 245 Pfam Ring finger domain 193 235 IPR001841 -
Bva09g01279 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
Bva09g01279 245 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Bva09g01279 245 MobiDBLite consensus disorder prediction 95 137 - -
Bva09g01279 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 244 IPR033276 GO:0004842|GO:0016567|GO:0046621
Bva09g01279 245 SUPERFAMILY RING/U-box 193 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01279 Bva-Chr9 6921577 6926522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01279 3 243 C3H Transcription Factor Family AT3G63530 58.025 1.73e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01279 K19045 - gmx:100785290 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01288 07 13616085 13621053 Bva09g01279 09 6921577 6926522 ECH
Bva09g01279 09 6921577 6926522 Bva09g01279 09 6921577 6926522 ECH